BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914535
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53490.1 | Symbols: | RING/U-box superfamily protein | chr1... 1552 0.0
> AT1G53490.1 | Symbols: | RING/U-box superfamily protein | chr1:19963267-19966952
FORWARD LENGTH=2252
Length=2252
Score = 1552 bits (840), Expect = 0.0
Identities = 887/910 (97%), Gaps = 2/910 (0%)
Strand=Plus/Plus
Query 1 ATGAGATGCAACGCGTGTTGGAGGGATCTGGAGGGCAGGGCCATTTCCACCACTTGCGGT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1197 ATGAGATGCAACGCGTGTTGGAGGGACCTGGAGGGCAGGGCCATTTCCACCACTTGCGGT 1256
Query 61 CACTTATTATGCACTGAAGATGCCAGCAAGATTCTCAGTAATGATGGGGCATGTCCCATT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CACTTATTATGTACTGAAGATGCCAGCAAGATTCTCAGTAATGATGGGGCATGTCCCATT 1316
Query 121 TGTGATCAAGTACTCTCCAAGAGTCTAATGAAACCTGTGGATATCAATCCAAATGAAGAA 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1317 TGTGATCAAGTACTCTCCAAGAGTTTAATGAAACCTGTGGATATCAATCCAAATGAAGAA 1376
Query 181 TGGATAAATATGGCGATGGCTGGAATTTCTCCACAAATACTGATGAAGAGTGCATACCGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TGGATAAATATGGCGATGGCTGGAATTTCTCCACAAATACTGATGAAGAGTGCATACCGA 1436
Query 241 AGTGTAATGTTTTACATTGCCCAAAGGGACTTAGAGATGCAGTACAAGATGAATAGAGTT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1437 AGTGTAATGTTTTACATTGCCCAAAGAGACTTAGAGATGCAGTACAAGATGAATAGAGTT 1496
Query 301 GTTGCACAGTGTCGTCAGAAATGTGAGGGTATGCAAGCAAAGTTTAGCGAGAAAATGGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GTTGCACAGTGTCGTCAGAAATGTGAGGGTATGCAAGCAAAGTTTAGCGAGAAAATGGAG 1556
Query 361 CAGGTGCATACAGCATACCAGAAGATGGGCAAGAGGTGTCAGATGATGGAGCAAGAGGTA 420
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CAGGTCCATACAGCATATCAGAAGATGGGCAAGAGGTGTCAGATGATGGAGCAAGAGGTA 1616
Query 421 GAAAACTTGACCAAGGATAAGCAAGAGCTCCAAGAGAAGTTCTCTGAGAAATCAAGACAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GAAAACTTGACCAAGGATAAGCAAGAGCTCCAAGAGAAGTTCTCTGAGAAATCAAGACAG 1676
Query 481 AAGAGGAAGCTTGATGAGATGTATGACCAGCTAAGAAGTGAGTATGAGTCAGTCAAACGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1677 AAGAGGAAGCTTGATGAGATGTATGACCAGCTAAGAAGTGAGTATGAGTCAGTTAAACGT 1736
Query 541 ACAGCCATCCAACCAGCAAACAACTTCTATCCGCGACACCAAGAACCCGACTTTTTCTCT 600
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1737 ACAGCCATCCAACCAGCAAACAACTTCTACCCGCGACACCAAGAACCCGACTTTTTCTCA 1796
Query 601 AACCCAGCAGTTAACATGATGGAGAACAGAGAGCCCATTCGCAAAGACCGCTCGTTTTTC 660
|||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1797 AACCCAGCAGTTAATATGATGGAGAACAGAGAGACCATTCGCAAAGACCGGTCGTTTTTC 1856
Query 661 TCTCCTGCAACACCAGGACCTAAAGATGAGATATGGCCAGCAAGACAGAACAGTTCAAAT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TCTCCTGCAACACCAGGACCTAAAGATGAGATATGGCCAGCAAGACAGAACAGTTCAAAC 1916
Query 721 TCGGGTCCATTCGACATCTCCACTGACTCACCCGCGATTCCATCCGATCTTGGAAACAGA 780
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1917 TCAGGTCCATTCGACATCTCCACCGACTCACCTGCGATTCCATCCGATCTTGGAAACAGA 1976
Query 781 AGAGCAGG-AGGAGGACATCCTGTATATGGTGGTGGTGGCACTTCTAATCCCCAGTCAAC 839
||||| || || ||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1977 AGAGCTGGCAG-AGGACATCCTGTATACGGTGGTGGTGGCACTGCTAATCCCCAGTCAAC 2035
Query 840 TCTACGAAACCTTATTCTCTCCCCTATTAAGCGTTCTCAGCTCTCTCGTTCCCGCCCTCA 899
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2036 TCTACGAAACCTTATTCTCTCCCCTATTAAACGTTCTCAGCTCTCTCGTTCCCGCCCTCA 2095
Query 900 ACTGTTCACG 909
|||||||||
Sbjct 2096 GCTGTTCACG 2105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5