BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914546
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53580.1 | Symbols: GLX2-3, ETHE1, GLY3 | glyoxalase II 3 |... 1216 0.0
> AT1G53580.1 | Symbols: GLX2-3, ETHE1, GLY3 | glyoxalase II 3
| chr1:19991275-19993334 REVERSE LENGTH=1236
Length=1236
Score = 1216 bits (658), Expect = 0.0
Identities = 743/782 (95%), Gaps = 13/782 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTCGTCTTCATCTTTctcctcctcctcctcctcGAAGCTTCTCTTTCGTCAACTC 60
|||||||||||||| |||||||||| || || |||||||||||||||||||||||||||
Sbjct 199 ATGGGTTCGTCTTCTTCTTTCTCCT-CT--TCTTCCTCGAAGCTTCTCTTTCGTCAACTC 255
Query 61 TTTGAGAAAGAATCTTCCACCTTTACTTATCTTCTCGCCGACGTTTCTCATCCTGATAAA 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TTTGAGAACGAATCTTCCACCTTTACTTATCTTCTCGCCGACGTTTCTCATCCTGATAAA 315
Query 121 CCAGCTTTGTTAATTGATCCGGTGGACAAGACTGTGGATAGAGACTTGAAGCTGATAAAT 180
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 316 CCTGCTTTGTTGATTGATCCGGTGGACAAGACTGTGGATAGAGACTTGAAACTGATTGAT 375
Query 181 GAGTT-GGGCTTAAAGCTTATCTATGCTATGAACACTCATGTTCATGCTGATCATGTCAC 239
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GAGTTAGGAC-TAAAGCTTATCTATGCTATGAACACTCATGTTCATGCTGATCATGTCAC 434
Query 240 TGGAACTGGACTTCTTAAGACGAAGCTCCCGGGTGTGAAATCCGTTATTTCGAAAGCAAG 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TGGTACTGGACTTCTTAAGACGAAGCTCCCGGGTGTGAAATCCGTTATTTCGAAAGCAAG 494
Query 300 TGGTTCCAAAGCTGATATGTTTCTTGAACCCGGTGACAAAGTATCTATCGGCGATATATA 359
|||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 495 TGGTTCCAAAGCTGATTTGTTTCTTGAACCTGGTGACAAAGTATCTATTGGTGATATATA 554
Query 360 CCTCGAGGTTCGTGCTACACCTGGGCATACTGCAGGATGTGTTACATATGTGACTGGAGA 419
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 555 CCTTGAGGTTCGTGCTACACCTGGACACACTGCAGGATGTGTTACATATGTGACTGGTGA 614
Query 420 A-GAGGCAGATCAGCCCCAACCAAGAATGGCTTTTACCGGGGATGCTGTACTCATCCGTG 478
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AGGA-GCTGATCAGCCCCAACCAAGAATGGCTTTTACCGGGGATGCTGTACTCATCCGTG 673
Query 479 GTTGTGGGAGGACTGACTTTCAGGGTGGAAGCTCTGATCAACTCTACGAGTCTGTACATT 538
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 674 GTTGTGGGAGGACTGACTTTCAGGAAGGAAGCTCAGATCAACTCTACGAGTCTGTACATT 733
Query 539 CACAGGCAAGTATATTTACACTGCCAAAGGACACATTGATCTATCCAGCTCACGATTACA 598
|| | || ||||||||| ||||||||||||||||||||||||| |||||||| ||||
Sbjct 734 --CA--C-AG-ATATTTACATTGCCAAAGGACACATTGATCTATCCTGCTCACGACTACA 787
Query 599 AAGGTTTCGAGGTAAGTACAGTTGGAGAAGAGATGCAACACAACCCGCGTCTAACTAAAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AAGGTTTCGAGGTAAGTACAGTTGGAGAAGAGATGCAACACAACCCGCGTCTAACTAAAG 847
Query 659 ATAAAGAAACATTCAAAACCATTATGTCAAATCTGAATCTGTCGTATCCGAAGATGATTG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 ATAAAGAAACATTCAAAACCATTATGTCAAATCTGAATCTGTCGTATCCGAAGATGATTG 907
Query 719 ATGTTGCAGTACCAGCAAATATGGTATGTGGGTTACAAGATGTGCCTTCTCAAGCCAACT 778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 908 ATGTTGCAGTACCAGCAAATATGGTCTGTGGGTTACAAGATGTGCCTTCTCAAGCCAACT 967
Query 779 AA 780
||
Sbjct 968 AA 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5