BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914549
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 405 1e-112
AT1G53620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 202 1e-51
> AT1G53610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53620.1); Has
14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20008996-20009320
REVERSE LENGTH=285
Length=285
Score = 405 bits (219), Expect = 1e-112
Identities = 265/285 (93%), Gaps = 12/285 (4%)
Strand=Plus/Plus
Query 1 ATGGAGCCTGTTGTTAATGTCATTATTGCAGTATCTGTCTGTGTTATTTTCGCATTGATT 60
||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 1 ATGGAGCCTGTTGTTAATGTCGTTATTGCAGTATCTGCCTGTGTTATTTTCGCGTTGATT 60
Query 61 GTCATAGGCTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCGAGATTTGGAA 120
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GTCATAGGCTGTGTCTCCTATAGGAAGAAAGAGCCTTTGTCTCAGCCACGAGATTTGGAA 120
Query 121 ACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGTAAATGACGCCAC- 179
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 121 ACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAAATGATGCCACC 180
Query 180 A-A-C------AGCTGC-G--GTGGTGATGGTGGAGGAGATGGCGGCGGTTGTGGAGGTT 228
| | | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAGCTGTTGTAGCTGCAGCTGTGGTGATGGTGGAGGAGATGGCGGCGGTTGTGGAGGTT 240
Query 229 GCGGCGGCTGTGGAGGTTAAGGGTTTCGTATATTGTTGGATTTGA 273
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 GCGGCGGCTGTGGAGGTTAAGGGTTTCGTATATTGTGGGATTTGA 285
> AT1G53620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53610.1); Has
5795 Blast hits to 2209 proteins in 338 species: Archae -
0; Bacteria - 1555; Metazoa - 2403; Fungi - 181; Plants - 1035;
Viruses - 76; Other Eukaryotes - 545 (source: NCBI BLink).
| chr1:20011429-20011925 REVERSE LENGTH=497
Length=497
Score = 202 bits (109), Expect = 1e-51
Identities = 148/167 (89%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCTGTTGTTAATGTCATTATTGCAGTATCTGTCTGTGTTATTTTCGCATTGATT 60
||||||||||||||||||||||| ||| | || || |||||||||||||| |||| |
Sbjct 19 ATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGTTATTTTCGTGTTGACT 78
Query 61 GTCATAGGCTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCGAGATTTGG-A 119
|||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct 79 GTCATATGCTGTATCTCCCATAGGAAGAAAGAGCCTTTGTTTCAGCCGCGGGATTTGGAA 138
Query 120 AACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAG 166
||| ||| || |||||| |||||||||||||||||||||||||||||
Sbjct 139 AAC-GGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAG 184
Score = 111 bits (60), Expect = 3e-24
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 189 GGTGGTGATGGTGGAGGAGATGGCGGCGGTTGTGGAGGTTGCGGCGGCTGTGGAGGTTAA 248
|||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 265 GGTGATGCTGGTGGAGGAGATGGTGGCGGTTGTGGAGGTTGTGGCGGCTGTGGAGGTTAA 324
Query 249 GGGTTTCGTATA 260
||||||||||||
Sbjct 325 GGGTTTCGTATA 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5