BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914550
Length=321
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 453 4e-127
AT1G53610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 202 2e-51
> AT1G53620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53610.1); Has
5795 Blast hits to 2209 proteins in 338 species: Archae -
0; Bacteria - 1555; Metazoa - 2403; Fungi - 181; Plants - 1035;
Viruses - 76; Other Eukaryotes - 545 (source: NCBI BLink).
| chr1:20011429-20011925 REVERSE LENGTH=497
Length=497
Score = 453 bits (245), Expect = 4e-127
Identities = 285/304 (94%), Gaps = 3/304 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGGTATTTTCGTGTTGACT 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 19 ATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGTTATTTTCGTGTTGACT 78
Query 61 GTCATATGTTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCGGGATTTGGAA 120
|||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 79 GTCATATGCTGTATCTCCCATAGGAAGAAAGAGCCTTTGTTTCAGCCGCGGGATTTGGAA 138
Query 121 AAAGGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAGGAACAGCTGTTGTA 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AACGGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAGGAACAGCTGTTGTT 198
Query 181 GGTGCGGCTGTAACCACAGCACGTTCTGGCGGTTGCGGTGGTGGAGGAGATGGTGGCGGT 240
| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 199 GCTGCGGGTGTAACCACAGAACGTTCTGGCGGTTGCGGCGGTGGAGGAGATGGTGGCGGT 258
Query 241 TGTGAAGGTGATGCTGGTGGAGGAGATGGTG-CTG--GAGGAGATGGTGGCGGTTGTGGA 297
||||| ||||||||||||||||||||||||| | | | |||| | ||||||| ||||||
Sbjct 259 TGTGATGGTGATGCTGGTGGAGGAGATGGTGGCGGTTGTGGAGGTTGTGGCGGCTGTGGA 318
Query 298 GGTT 301
||||
Sbjct 319 GGTT 322
Score = 91.6 bits (49), Expect = 4e-18
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 273 TGGAGGAGATGGTGGCGGTTGTGGAGGTTGTGGCGGCTGTGGAGGTTAA 321
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TGGAGGAGATGGTGGCGGTTGTGGAGGTTGTGGCGGCTGTGGAGGTTAA 324
> AT1G53610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53620.1); Has
14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20008996-20009320
REVERSE LENGTH=285
Length=285
Score = 202 bits (109), Expect = 2e-51
Identities = 149/169 (88%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGGTATTTTCGTGTTGACT 60
||||||||||||||||||||| | ||| | || |||||||| |||||||| ||||| |
Sbjct 1 ATGGAGCCTGTTGTTAATGTCGTTATTGCAGTATCTGCCTGTGTTATTTTCGCGTTGATT 60
Query 61 GTCATATGTTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCGGGATTTGGAA 120
|||||| | ||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 61 GTCATAGGCTGTGTCTCCTATAGGAAGAAAGAGCCTTTGTCTCAGCCACGAGATTTGGAA 120
Query 121 AAAGGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAGGAA 169
| ||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 121 ACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAA 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14929521453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5