BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914555

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53640.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   167    5e-41


> AT1G53640.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant 
structures; EXPRESSED DURING: 11 growth stages; Has 1186 Blast 
hits to 678 proteins in 89 species: Archae - 0; Bacteria 
- 50; Metazoa - 731; Fungi - 92; Plants - 226; Viruses - 4; 
Other Eukaryotes - 83 (source: NCBI BLink). | chr1:20020885-20025461 
REVERSE LENGTH=873
Length=873

 Score =  167 bits (90),  Expect = 5e-41
 Identities = 123/139 (88%), Gaps = 2/139 (1%)
 Strand=Plus/Plus

Query  30   CAAGGAGGAGGAGCCGATGTCATCACCTCCGAGAGATGATGCCAAAAAAGGAGAGACGGC  89
            ||||||||||||| ||| |||||| ||||| | |||| | | ||||||||| || ||| |
Sbjct  675  CAAGGAGGAGGAGGCGAAGTCATCTCCTCCAAAAGATAACGTCAAAAAAGGTGAAACGAC  734

Query  90   GGGAACAAAAGATGGAGGTCTTGTT-TTCATGTCGTCTTCGGGAAAAAGTAAGACCAAAG  148
            ||||| ||||||||||||||||||| ||  |||||||||||| |||||||||||||||||
Sbjct  735  GGGAAAAAAAGATGGAGGTCTTGTTGTT-GTGTCGTCTTCGGAAAAAAGTAAGACCAAAG  793

Query  149  GCTGTTGTTGCGGCGGAGG  167
            |||||||||||||||||||
Sbjct  794  GCTGTTGTTGCGGCGGAGG  812



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5