BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914558
Length=2310
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53645.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2342 0.0
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:2... 1166 0.0
> AT1G53645.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:20026147-20028635 REVERSE LENGTH=1907
Length=1907
Score = 2342 bits (1268), Expect = 0.0
Identities = 1494/1598 (93%), Gaps = 36/1598 (2%)
Strand=Plus/Plus
Query 731 TCTCACAGATGAGAAGTGCTTTAGGAAGAAGATTATCAAACCCTAATGGCTTCACTATTG 790
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 41 TCTCACAGATGAGAAGTGCTATAGGAAGAAGATTCTCAAACCCTAATGGCTTCACCATTG 100
Query 791 CATCCATAGTCAAACAAACTCCATTTCTCATCCAATCCACATCTCATTTCTCCTCTTCCT 850
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 101 CATCCTTAGTCAAACAAACTCCATTTCTCACCCAATCCACATCTCATTTCTCCTCTTCCT 160
Query 851 CCGACTCCTCCGGCCGTGGTCGTGGACGCGGTTCCGGTGAAGATGGAGGATTTCCCGCCG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 CCGACTCCTCCGGCCGTGGTCGTGGACGCGGTTCCGGTGAAGATGGAGGATTTCCCGCCG 220
Query 911 CTGGAAGGGGACAATTCGGTGTAAATCGTGAACCGGTGGCTCCCGGACGTGAACCGTCAT 970
||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 221 CTGGAAGAGGACAATTCGGTGTAAATCGTGAACCGGTGGTTCCTGGACGTGAACCGTCAT 280
Query 971 CTGCTGGAGGTTATGGTCATGGTCGTGGTTGTCCGATCCAATCTGATTCGATTTCTCCTG 1030
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 281 CTGCCGGAGGTTATGGTCATGGTCGTGGTCGTCCGATCCAATCTGATTCGATTTCTCCTG 340
Query 1031 CGTTTTCGTCATTTGTCAAATCGGATTCTCCTAGCGTTGGCCGTGGAAGAGGATCCGTTG 1090
||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 341 CGTTTACGTCATTTGTCAAATCAGATTCTCCTAGTATTGGCCGTGGAAGAGGATCCGTTG 400
Query 1091 GATCAGATTCCGTTTCACCTTTCGCTCCTGAACCTCCTCGCCAACCGCCGCCGCCACCGC 1150
||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 401 GATCAGACACCGTTTCACCTTTCGCTGCTGAACCTCCTCGCCAATCGCCGCCTCCACCGC 460
Query 1151 AGCAACAACAGTCTCAGTCGCAGCAACCGCGTTCACCACCACAACAGC--CA-CCGCGTT 1207
|||||||||||||||| |||||||||| |||||||| ||||||||||| || |||||||
Sbjct 461 AGCAACAACAGTCTCAATCGCAGCAACAGCGTTCACAACCACAACAGCAGCAGCCGCGTT 520
Query 1208 TGCAA--AC-GCAGC--CC-AATGATGAATCTCAGGGAAGTCCTGTATTTGTGAAGCTGC 1261
|||| || ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CGCAACCACAGCAGCAGCCTAATGATGAATCTCAGGGAAGTCCTGTATTTGTGAAGCTGC 580
Query 1262 AGGAGATGCAGGACGCAACTTCGTCTCCACCAACACCAGAGTCTAAATCTGGTCAAGCTG 1321
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 581 AGGAGATGCAGGACGCAACTTCGTCTCCACCACCACCAGAGTCTAAACCTGGTCAAGCTG 640
Query 1322 ATCCACCTGATAACATATTCAATGCCTTAGGAAGTGAATTTTCACAACCTAGTGGAGCAG 1381
||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 641 ATCCACCTGATAACATATTCAATGCATTAGGAAACGAATTTTCACATCCTAGTGGAGCAG 700
Query 1382 GTCGAGGAAAGCCTCTTGTGGAATCTGCTCCAATCCAACAAGAAGATAACCGCCAAATTC 1441
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 701 GTCGAGGAAAGCCTCTTGTGGAATCTGCTCCAATCCGACAAGAAGATAACCGCCAAATTC 760
Query 1442 GACGCCCTCAGCCTCCGCCTCCGCAGCAGCAGCAACAGCAACAAAGAGCACAACCGCAGC 1501
|||| | ||||||||| | || | | | ||||| || |||| |||||| ||||
Sbjct 761 GACG----C--CCTCCGCCT-C-CA-C--C-G---CAGCAGCAGAGAGTACAACCTCAGC 805
Query 1502 AGAAGCGGGCTCCAACTGTCAAGGA-GGAAGCTCCTAAGCCTCAATTGAGTAG-GGAAGA 1559
|||||||||||||||| ||||| || |||| |||||||||| ||||||||| | ||||||
Sbjct 806 AGAAGCGGGCTCCAACGGTCAAAGATGGAA-CTCCTAAGCCGCAATTGAGT-GCGGAAGA 863
Query 1560 GGCTGGAAGAAGAGCAAGGAGCGAGCTTTCGCGTGGTGAAGCTgaaggaggtggtgtaag 1619
||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |
Sbjct 864 GGCTGGAAGAAGAGCAAGGAGTGAGCTTTCGCGTGGTGAAGCTGAAGGAAGCAGTGTGGG 923
Query 1620 aggaagaggagggaga--g-ga---agaggaagaggagcgagagggagaggtagaggaag 1673
|||||||||||||||| | || |||||||||||||| ||||||||||| ||||||||
Sbjct 924 AGGAAGAGGAGGGAGAGGGAGAGGGAGAGGAAGAGGAGCAAGAGGGAGAGGCAGAGGAAG 983
Query 1674 aggtggtgacggatggagagatgataagaaagaagaagaaggtGAACAAGAGGCTATGAG 1733
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 984 AGGTGGTGATGGATGGAGAGATGATAAGAAAGAAGAAGAAGGTGAACAAGAGGCTATGCG 1043
Query 1734 TATATTTGCTGGAGATTCAGCTGATGGAGAGAAGTTTGCTCAGAAAATGGGACCTGAATT 1793
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1044 TATATTTGCTGGAGATTCAGCTGATGGAGAGAAGTTTGCTGAGAAAATGGGACCTGAATT 1103
Query 1794 GATGAAAACG-TTAGCAGAAGGTTTTGAGGAAGTTTGCGAAAAGGCGTTGCCTTCTACTA 1852
|||||||||| || || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1104 GATGAAAACGCTT-GCGGAAGGTTTTGAGGAAATTTGCGAAAAGGCGTTGCCTTCTACTA 1162
Query 1853 CTCATGATGCCATTATAGATGCCTATGATACCAATCTCATGATTGAGTGTGAGCCAGAAT 1912
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1163 CTCACGATGCCATTATAGATGCTTATGATACCAATCTCATGATTGAGTGTGAGCCTGAAT 1222
Query 1913 ACATTATGCCGGACTTTGGATCGAATCCTGACATTGATGAGAAGCCACCAATGTCTCTGC 1972
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1223 ACATTATGCCAGACTTTGGATCAAATCCTGACATTGATGAGAAACCACCAATGTCTCTGC 1282
Query 1973 GCGAGTGCCTTGAGAAGGTGAAGCCTTTCATAGTGGCTTACGAGGGAATCAAGGATCAAG 2032
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1283 GTGAGTGCCTTGAGAAGGTGAAGCCTTTCATAGTGGCTTACGAAGGAATCAAGGATCAAG 1342
Query 2033 AAGAATGGGAGGAAGCGGTTAATGAAGCGATGGCGCAGGCTCCCCTTATGAAAGAGATTG 2092
|||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct 1343 AAGAATGGGAGGAAGCAATTAATGAAGCGATGACACAGGCTCCCCTTATGAAAGAGATTG 1402
Query 2093 TTGATCACTACAGTGGTCCTGATCGAGTAACTGCTAAGAAACAGAACGAGGAACTCGATA 2152
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1403 TTGATCACTACAGTGGTCCTGATCGTGTAACTGCTAAGAAACAGAACGAGGAACTCGATA 1462
Query 2153 GAATTGCTACAACGATTCCCGCAAGTGCACCTGATTCCGTGAAACGATTTGCAGATCGTG 2212
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 GAATTGCTACAACGCTTCCCGCAAGTGCACCTGATTCCGTGAAACGATTTGCAGATCGTG 1522
Query 2213 CAGCTCTTACTCTTAAGAGTAATCCTGGTTGGGGATTTGACAAGAAATACCAGTTCATGG 2272
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1523 CAGCTCTTACTCTTAAGAGTAATCCAGGTTGGGGATTTGATAAGAAATACCAGTTCATGG 1582
Query 2273 ACAAGCTCGTATTGGAGGTGTCACAAAGCTACAAATAG 2310
|||||||||| || ||||||||||||||||||||||||
Sbjct 1583 ACAAGCTCGTTTTAGAGGTGTCACAAAGCTACAAATAG 1620
> AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20029029-20031566
REVERSE LENGTH=1501
Length=1501
Score = 1166 bits (631), Expect = 0.0
Identities = 698/729 (96%), Gaps = 9/729 (1%)
Strand=Plus/Plus
Query 1 ATGTTCAAGAAACTCAATCCTCAAGCTAAGGAATTTTTCCCTTCTTACAAGAAGAATACT 60
||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||
Sbjct 489 ATGTTCAAGAAACTCAATCCTGAAGCTAAGGAGTTTTTCCCTTCTTACAAGAGGAATACT 548
Query 61 AATCAGTCTCTGTCTTCTGACGATTTTGTGATTGCTAAAAAGCCATCTGGTGAAGACAAC 120
||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 549 AATCA------G---TCTGACGATTTTGTGATTGCTATAAAGCCATCTGGTGAAGACAAC 599
Query 121 AAAAAGGATGGCATTAACCGGAGGAGAAGAAACAACTATAACCAAGGGAGGAGAGTGAGG 180
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAAAAGGTTGCCATTAACCGGAGGAGAAGAAACAACTATAACCAAGGGAGGAGAGTGAGG 659
Query 181 TTACCTGGAAGAGCTTCTAAGGCTCAAAGAGAAGATAGTATTAGAAGAACAGTATATGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 TTACCTGGAAGAGCTTCTAAGGCTCAAAGAGAAGATAGTATTAGAAGAACAGTGTATGTC 719
Query 241 TCTGACATTGATCAGAGTGTGACTGAGGAAGTCCTTGCTGGGTTGTTCAGCAGCTGTGGG 300
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 720 TCTGACATTGATCAGAGTGTGACTGAGGAAGGCCTTGCTGGCTTGTTCAGCAGCTGTGGA 779
Query 301 CAAGTTGTTGATTGTCGAATCTGTGGAGATCCAAATTCAGTTCTTCGCTTTGCGTTTGTT 360
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 780 CAAGTTGTTGATTGTCGAATCTGCGGGGATCCGAATTCAGTTCTTCGCTTTGCGTTTGTT 839
Query 361 GAGTTTTCTGATGACCAAGGTGCACGAGCGGCTTTAAGTCTTGGTGGGACAATGATCGGA 420
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 840 GAGTTTTCTGATGACCAAGGTGCACGATCGGCTTTAAGTCTTGGTGGAACAATGATCGGA 899
Query 421 TATTACCCTGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCACATTT 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCACATTT 959
Query 481 CTCCCCAGGTCAGAAGATGAAAGAGAGATGTGTACAAGAACCATCTACTGCACAAATGTT 540
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 960 CTCCCCAGGTCAGAAGATGAAAGAGAGATGTGTTCAAGGACCATCTACTGCACAAATGTT 1019
Query 541 GACAAGAATGCCACTGAAGATGATGTCAAAACCTTCTTTCAGTCTGCCTGCGGTGAGGTT 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1020 GACAAGAATGCCACTGAAGATGATGTCAATACCTTCTTTCAGTCTGCCTGCGGTGAGGTT 1079
Query 601 ACTCGCTTAAGGCTTCTTGGTGATCAAGTGCATTCTACTCGCATAGCTTTTGTTGAATTC 660
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 ACTCGCTTAAGGCTTCTTGGTGACCAAGTGCATTCTACTCGCATAGCTTTTGTTGAATTT 1139
Query 661 GCCATGGCAGAGAGTGCAGTTGCAGCGTTAAACTGCAGCGGAATAGTCTTAGGATCTCAG 720
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 GCCATGGCAGAGAGTGCAGTTGCAGCGCTAAACTGCAGCGGAATAGTCTTAGGATCTCAG 1199
Query 721 CCGATAAGG 729
|||||||||
Sbjct 1200 CCGATAAGG 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114658044780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5