BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914559
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53660.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1596 0.0
AT3G14410.1 | Symbols: | Nucleotide/sugar transporter family p... 937 0.0
> AT1G53660.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:20034032-20035946 FORWARD LENGTH=999
Length=999
Score = 1596 bits (864), Expect = 0.0
Identities = 955/1000 (96%), Gaps = 2/1000 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGATCGAAATCGCATCAGAAGCTTTCTCAAAGATGAACATGTGACGTATGCTTCC 60
||||||||||||| ||| |||||| ||||||| | ||| |||||||||||||||||||||
Sbjct 1 ATGGCGGATCGAAGTCGGATCAGAGGCTTTCTTAGAGAAGAACATGTGACGTATGCTTCC 60
Query 61 ATCCTTCTCTACATTACTCTATCTAGCGGTCAAATCTTCTTCAATAAGTGGGTACTGTCA 120
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ATTCTTCTCTACATCACTCTCTCTAGCGGTCAAATCTTCTTCAATAAGTGGGTATTGTCA 120
Query 121 TCTAAGGAAATAAACTTCCCTTATCCACTTGGATTGACATTACTACATATGAGTTTTTCC 180
|||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 121 TCTAAGGAAATAAACTTCCCTTATCCACTTGGATTGACATTACTTCACATGACTTTTTCC 180
Query 181 TCTGTTTTGTGTTTTCTCCTCACCAAGGTTTTCAAGGTCATGAAGGTTGAGGAAGGAATG 240
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 181 TCTGTTTTGTGTTTTCTCCTCACGAAGGTTTTTAAGGTCATGAAGGTTGAGGAAGGAATG 240
Query 241 ACATTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAATGTTTGCAATGACTCTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACATTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAATGTTTGCAATGACTCTA 300
Query 301 TGGTTAGGAAACACTGCTTACCTCTACATAACTGTTGCATTTTCCCAAATGTTGAAGGCC 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TGGTTAGGAAACACTGCTTATCTCTACATAACTGTTGCATTTTCCCAAATGTTGAAAGCC 360
Query 361 ATTATGCCTGTTGCTGTGTTTATACTTGGAGTTTGTGTTGGCCTTGAAATAATGAGCTGC 420
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 ATCATGCCTGTTGCTGTGTTTATACTTGGAGTTTGTGTTGGGCTTGAAATAATGAGCTGC 420
Query 421 AAGATGCTTATGATAATGTCAGTCATAAGTTTTGGTGTTTTAGTCGCATCTTATGGAGAA 480
||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||| |||
Sbjct 421 AAGATGCTTTTGATAATGTCAGTCATAAGTTTTGGCGTTTTAGTCTCGTCTTATGGTGAA 480
Query 481 TTAAACATCAACTGGGTTGGAGTTGTTTACCAAATGGGTGGTATTGTTTCAGAAGCTTTG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 TTAAACATCAACTGGGTTGGAGTTGTTTACCAAATGGGTGGTATTGTTTCAGAAGCCTTG 540
Query 541 AGGCTAATCTTAATGGAAATTCTTGTGAAGAGGAAAGGCATCAAATTAAATCCACTCTCT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 AGGCTAATCTTAATGGAAATTCTTGTTAAGAGGAAAGGCATCAAATTAAATCCACTCTCT 600
Query 601 CTTATGTACTACATGAGCCCATGCAGCGCGATTTGCTTGTTCATACCATGGATATTTCTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTATGTACTACATGAGCCCATGCAGCGCGATTTGCTTGTTCATACCATGGATATTTCTT 660
Query 661 GAGAAGTCGAAGATGGAAACATGGAACTTTCATGTTCTTGTGTTGAGTCTTAATTCGCTA 720
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GAGAAGTCGAAGATGGATACATGGAACTTTCATGTTCTTGTCTTGAGTCTTAATTCGCTA 720
Query 721 TGTACATTTGCTCTCAATTTGTCGGTTTTTCTTGTGATATCTCAAACAAGTGCTCTCACT 780
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 721 TGTACATTTGCTCTCAATTTGTCGGTTTTTCTTGTGATATCTCGAACAAGTGCTCTTACT 780
Query 781 ATCCGAATTGCTGGCGTGGTTAAAGATTGGTTGGTTGTTTTGGTCTCAGCCCTTCTCTTT 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 ATCCGAATTGCTGGCGTGGTTAAAGATTGGTTGGTTGTTTTGGTCTCAGCTCTTCTCTTT 840
Query 841 GCCGAGACAAAACTCACAATCATCAATTTATTTGGTTATGCCATTGCCATTGCTGGTGTA 900
||||||||||||||||||||||||||| | |||||||||||| ||||||| | |||||||
Sbjct 841 GCCGAGACAAAACTCACAATCATCAATCTCTTTGGTTATGCCGTTGCCATCGTTGGTGTA 900
Query 901 GCTGCATATAACAACCATAAGCCAAAGAACGGCGAAAGAATAACGTTGGTTTCTCAATCT 960
||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 901 GCTACGTATAACAACCATAAGCCAAAGAACGGTGAAAGCATAACGTTGGTTTCTCAATCT 960
Query 961 CC-AACAAACTCCGACAAGAAACCCGGTGGCCCATTGTAG 999
|| || |||||||||||||||||||| ||||||||| |||
Sbjct 961 CCGAA-AAACTCCGACAAGAAACCCGATGGCCCATTATAG 999
> AT3G14410.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr3:4815811-4817980 REVERSE LENGTH=1322
Length=1322
Score = 937 bits (507), Expect = 0.0
Identities = 773/900 (86%), Gaps = 23/900 (3%)
Strand=Plus/Plus
Query 46 GTGACGTATGCTTCCATCCTTCTCTACATTACTCTATCTAGCGGTCAAATCTTCTTCAAT 105
||||| ||||||| ||| |||||||| || |||| ||||| ||||||||||||||||||
Sbjct 168 GTGACCTATGCTTACATTCTTCTCTATATCGCTCTTTCTAGTGGTCAAATCTTCTTCAAT 227
Query 106 AAGTGGGTACTGTCATCTAAGGAAATAAACTTCCCTTATCCACTTGGATTGACATTACTA 165
|||||||| |||||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 228 AAGTGGGTTTTGTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTC 287
Query 166 CATATGAGT-TTTTCCTCTGTTTTGTGTTTTCTCCTCACCAAGGTT-TTCAAGGTCATGA 223
||||||| | ||||||||||| ||||| ||||| || ||||| ||| || ||| | |||
Sbjct 288 CATATGA-TCTTTTCCTCTGTCTTGTGCTTTCTTCTTACCAAAGTTCTT-AAGATTGTGA 345
Query 224 AGGTTGAGGAAGGAATGACATTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAA 283
|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 346 AGGTCGAGGAAGGAATGACACTAGAAATATATGTTACGTCAGTTATTCCAATAGGTGCAA 405
Query 284 TGTTTGCAATGACTCTGTGGTTAGGAAACACTGCTTACCTCTACATAACTGTTGCATTTT 343
||||||||||||| || ||||| ||||||||||| |||||||||||| | |||||||||
Sbjct 406 TGTTTGCAATGACCCTCTGGTTGGGAAACACTGCCTACCTCTACATATCAGTTGCATTTG 465
Query 344 CCCAAATGTTGAAGGCCATTATGCCTGTTGCTGTGTTTATACTTGGAGTTTG-TGTTGGC 402
| || ||||||||||| || |||||||||||||||||||| |||||||| | || |||
Sbjct 466 CGCAGATGTTGAAGGCTATAATGCCTGTTGCTGTGTTTATTCTTGGAGTA-GCTGCTGGA 524
Query 403 CTTGAAATAATGAGCTGCAAGATGCTTATGATAATGTC-AGTCATAAGTTTTGGTGTTTT 461
|||||||| |||||||||| ||||||| |||||||||| | |||||||||||||||||||
Sbjct 525 CTTGAAATGATGAGCTGCAGGATGCTTTTGATAATGTCTA-TCATAAGTTTTGGTGTTTT 583
Query 462 AGTCGCATCTTATGGAGAATTAAACATCAACTGGGTTGGAGTTGTTTACCAAATGGGTGG 521
||| || |||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 584 AGTAGCTTCTTATGGGGAATTAAACATCAACTGGATTGGAGTGGTTTACCAAATGGGTGG 643
Query 522 TATTGTTTCAGAAGCTTTGAGGCTAATCTTAATGGAAATTCTTGTGAAGAGGAAAGGCAT 581
| ||||| |||||| ||||||||||||| |||||| ||||||| |||||||| |||||
Sbjct 644 TGTTGTTGGAGAAGCCCTGAGGCTAATCTTCATGGAACTTCTTGTCAAGAGGAAGGGCAT 703
Query 582 CAAATTAAATCCACTCTCTCTTATGTACTACATGAGCCCATGCAGCGCGATTTGCTTGTT 641
||| ||||| ||| ||||||||||||||||| ||||||||||||| || || ||||||||
Sbjct 704 CAAGTTAAACCCAATCTCTCTTATGTACTACGTGAGCCCATGCAGTGCTATCTGCTTGTT 763
Query 642 CATACCATGGATATTTCTTGAGAAGTCGAAGATGGA----AA---C--ATGGAACTTTCA 692
| || ||||| ||||| ||||| |||||||| || || | ||||||||| ||
Sbjct 764 TGTGCCGTGGATCTTTCTAGAGAAATCGAAGATAGATGGCAATGGCCCATGGAACTTCCA 823
Query 693 -TGTTCTTGTGTTGAGTCTTAATTCGCTATGTACATTTGCTCTCAATTTGTCGGTTTTTC 751
| || | ||||||| |||||||| || ||||||||||| ||||| ||||||||||| |
Sbjct 824 CT-TTGTAGTGTTGACCCTTAATTCCCTCTGTACATTTGCCCTCAACTTGTCGGTTTT-C 881
Query 752 TTG-TGATATCTCAAACAAGTGCTCTCACTATCCGAATTGCTGGCGTGGTTAAAGATTGG 810
||| |||| ||||| || |||||||||||||||||| |||||||||| || || ||||||
Sbjct 882 TTGGTGATTTCTCACACGAGTGCTCTCACTATCCGAGTTGCTGGCGTTGTCAAGGATTGG 941
Query 811 TTGGTTGTTTTGGTCTCAGCCCTTCTCTTTGCCGAGACAAAACTCACAATCATCAATTTA 870
||||||| ||||| ||||| |||||||||||||| || |||||||||||||||||| |
Sbjct 942 GTGGTTGTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCT- 1000
Query 871 TTT-GGTTATGCCATTGCCATTGCTGGTGTAGCTGCATATAACAACCATAAGCCAAAGAA 929
||| ||||| ||||| || ||||| |||||||| || |||||||||||||||| |||||
Sbjct 1001 TTTCGGTTACGCCATCGCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAA 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5