BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914583
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53930.1 | Symbols: | Ubiquitin-like superfamily protein | ... 545 1e-154
AT3G09790.1 | Symbols: UBQ8 | ubiquitin 8 | chr3:3003862-300619... 93.5 2e-18
> AT1G53930.1 | Symbols: | Ubiquitin-like superfamily protein
| chr1:20140411-20140887 REVERSE LENGTH=477
Length=477
Score = 545 bits (295), Expect = 1e-154
Identities = 414/471 (88%), Gaps = 9/471 (2%)
Strand=Plus/Plus
Query 1 ATGGATGGGAAAACAACGATCAACCTAGAGGTCGATAGCTCCAAAACCATCGACCTCAAA 60
|||||||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 1 ATGGATGGGAAAACAAGGATCAACCTAGAGGTTGATAGCTCCAAAACCGTCAACCTCAAA 60
Query 61 ATCGACGAAGACCCGACGAGCTGTCGAAATATTCCACAGGACATTCGTCATAGTAAAGTC 120
||||||||||||||||||| | ||| ||||||||||| |||||||| |||| ||||||||
Sbjct 61 ATCGACGAAGACCCGACGATCAGTCAAAATATTCCACCGGACATTCTTCATGGTAAAGTC 120
Query 121 ATGCAGATTTTTATAAAGACAGTGGGTGAAATA-ACAATGATCAACCTAGAGGTCGATAG 179
||||| ||| |||||| || || || ||| | ||||||||||||||||||||||||||
Sbjct 121 ATGCATCTTTCTATAAATACTGT-GGACAAAAACACAATGATCAACCTAGAGGTCGATAG 179
Query 180 CTACAAAATTATCGACCTCAAGATCGATGAAAACCCAATCC-GTCCAAATAATGGGCCGG 238
|| ||||| ||||||||||| |||| ||||| |||| || || | ||||||||||||
Sbjct 180 CTCCAAAACCATCGACCTCAATATCGGCGAAAATCCAA-CCGGTGGATATAATGGGCCGG 238
Query 239 ACTTTCGTCATGGTGAAGGCATGCTTATTTTTATTAAAACTTTGACGGGAAGGAGAATCG 298
|||||||||| ||||| |||| ||||||||||||| |||||||| |||||||||||||
Sbjct 239 ACTTTCGTCA---TGAAGTCATGTTTATTTTTATTAAGACTTTGACAGGAAGGAGAATCG 295
Query 299 TCTTAGAGGTGGAAAACCGCGATTCCATTGAAAACGTCAAGGCCAAGATCCAAGATAAAG 358
||||||||||||| ||| |||| | ||||||||| |||||||||| || |||||||||
Sbjct 296 TCTTAGAGGTGGAGAACTGCGACACTATTGAAAACATCAAGGCCAAAATTCAAGATAAAC 355
Query 359 AAGGCATCCCGGTGG-GCAGGCAGAGGCTGATGTTTAAAAGCAAGCAACTCGAAGATGGT 417
||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||
Sbjct 356 AAGGCATCCCGGTGGACCA-ACAGAGGCTGATTTTTAAAGGCAAGCAACTCGAAGATGGT 414
Query 418 CTCACCGTAGCCGACTACAACATCCAGAACGACTCGATCCTTCACTTGATA 468
||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 415 CTCACTTTAGCTGACTACAACATCCAGAACGACTCGATCCTTCACTTGATA 465
Score = 93.5 bits (50), Expect = 2e-18
Identities = 107/133 (80%), Gaps = 9/133 (7%)
Strand=Plus/Plus
Query 10 AAA-ACAACGATCAACCTAGAGGTCGATAGCTCCAAAACCATCGACCTCAAAATCGACGA 68
||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 150 AAACACAATGATCAACCTAGAGGTCGATAGCTCCAAAACCATCGACCTCAATATCGGCGA 209
Query 69 AGACCCGAC-GAGCTGTCGAAATATTCCACAGGACATTCGTCATAGTAAAGTCATGCAGA 127
| | || || | | || || ||| | | |||| |||||||| | || |||||| |
Sbjct 210 AAATCCAACCG-G-TG--GATATAATGGGCCGGACTTTCGTCAT-G-AA-GTCATGTTTA 262
Query 128 TTTTTATAAAGAC 140
||||||| |||||
Sbjct 263 TTTTTATTAAGAC 275
> AT3G09790.1 | Symbols: UBQ8 | ubiquitin 8 | chr3:3003862-3006192
REVERSE LENGTH=2331
Length=2331
Score = 93.5 bits (50), Expect = 2e-18
Identities = 98/120 (82%), Gaps = 8/120 (7%)
Strand=Plus/Plus
Query 331 AACGTCAAGGCCAAGATCCAAGATAAAGAAGGCATCC--CGGTGGGCAGGCAGAGGCTGA 388
|||||||||||||||||||||||||||||||| |||| | | | ||| ||||| || |
Sbjct 493 AACGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCTTCC-TCGCCAG-CAGAGACTTA 550
Query 389 TGTTTAAAAGCAAGCAACTCGAAGATGGTC-TCAC-CGTAGCCGACTACAACATCCAGAA 446
| ||| | | ||||||||||| ||||||| | || | | ||||| ||||||||||||||
Sbjct 551 TCTTTGCAGGTAAGCAACTCGAGGATGGTCGT-ACTCTT-GCCGATTACAACATCCAGAA 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5