BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914585

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53935.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   145    4e-34


> AT1G53935.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G23180.1); 
Has 29 Blast hits to 24 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20142065-20142866 
REVERSE LENGTH=760
Length=760

 Score =  145 bits (78),  Expect = 4e-34
 Identities = 104/116 (90%), Gaps = 4/116 (3%)
 Strand=Plus/Plus

Query  83   TTGCAAGCTGGGATAAGGTCAAAGATGGACCAAAGAAGCGAGAGTTGGAAATA-ACGTTG  141
            ||||||||||||  |||||||||||||||||||||||||||||| |||||| | || |||
Sbjct  630  TTGCAAGCTGGGGGAAGGTCAAAGATGGACCAAAGAAGCGAGAGATGGAAA-ACACATTG  688

Query  142  AAGAAGATGGA-GGCTAAGCAAGCGGAGCTTTGTATGATAAGGATTGAATTTGTGG  196
            | ||||||| | ||||||||||||||||||||||||||| ||||||  ||||||||
Sbjct  689  ACGAAGATG-ATGGCTAAGCAAGCGGAGCTTTGTATGATGAGGATTTTATTTGTGG  743



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5