BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914595

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54070.1 | Symbols:  | Dormancy/auxin associated family prot...   549    7e-156


> AT1G54070.1 | Symbols:  | Dormancy/auxin associated family protein 
| chr1:20182639-20183242 FORWARD LENGTH=416
Length=416

 Score =  549 bits (297),  Expect = 7e-156
 Identities = 357/384 (93%), Gaps = 12/384 (3%)
 Strand=Plus/Plus

Query  1    ATGGGGTTCCTACACAAGCTGTGGGATGAAACGGTGGCCGGACCGACGCCGGACAATGGT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  45   ATGGGGTTCCTACACAAGCTGTGGGATGAAACGGTGGCCGGACCGACGCCGGACAATGGT  104

Query  61   CTCGGGAAATTGAGAAAGCACGATTCATTATCCACCGTCCGATCTTCTCCTCCTTCTCTC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  105  CTCGGGAAATTGAGAAAGCACGATTCATTATCCACCGTCCGATCTTCTCCTCCTTCTCTC  164

Query  121  TCAAGCGATCAAGTCACCAGAAGCATAATGGTTACCAAGGGGAATAACAATGTCCGTGGT  180
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  165  TCAAGCGACCAAGTCACCAGAAGCATCATGGTTACCAAGGGGAATAACAATGTTCGTGGT  224

Query  181  CTCCGTAAATTGAAAATGGATCCGGATCGTGTTCCGGATTCTCCAACTGGGTCAATCAGC  240
            |||||||||||||||||||||||||||  | | ||  |  | |    ||  |||| ||||
Sbjct  225  CTCCGTAAATTGAAAATGGATCCGGAT--TCT-CCA-A--C-C----TGT-TCAAGCAGC  272

Query  241  AACCCTGGGACGCCTTTAACCCCTGGGACACCATGCTATGATTTGGGACCATTCACTGCC  300
            ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  273  AACCCTGGGACACCTTTAACCCCTGGGACACCATGCTATGCTTTGGGACCATTCACTGCC  332

Query  301  GGTAAAATCCCTTCCTCCGGCGAAGACGATGCTGCAAGTCTCACCACTTATGAATGGATT  360
            || |||||||||||||| |||||||||||||| |||||||| || |||||||||||||||
Sbjct  333  GGCAAAATCCCTTCCTCTGGCGAAGACGATGCAGCAAGTCTAACTACTTATGAATGGATT  392

Query  361  GTGATTAACGCGTTGGACCGTTGA  384
            ||||| ||||||||||||||||||
Sbjct  393  GTGATAAACGCGTTGGACCGTTGA  416



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5