BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914606
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54160.1 | Symbols: NFYA5, NF-YA5 | nuclear factor Y, subuni... 1458 0.0
> AT1G54160.1 | Symbols: NFYA5, NF-YA5 | nuclear factor Y, subunit
A5 | chr1:20217336-20219452 REVERSE LENGTH=1462
Length=1462
Score = 1458 bits (789), Expect = 0.0
Identities = 883/928 (95%), Gaps = 8/928 (1%)
Strand=Plus/Plus
Query 1 ATGCAAGTGTTTCAAAGGAAAG-A-A-TCATCTTGGGGAAACTCAAT-AATGCCAACAAA 56
|||||||||||||||||||||| | | |||||||||||||||||||| | |||||||
Sbjct 291 ATGCAAGTGTTTCAAAGGAAAGAAGATTCATCTTGGGGAAACTCAATGCCT-ACAACAAA 349
Query 57 TTCAAATATTCAAGGATCTGAATCTTTTAGCTTGACAAAGGATATGATGATGTCTACAAC 116
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 350 TTCAAATATTCAAGGATCTGAATCTTTCAGCTTGACTAAGGATATGATAATGTCTACAAC 409
Query 117 ACAATTCCCCGGGACGAAACATTCGGGTTTGCAGCTGCAAGATCAAGATTCAACCTCAAC 176
|||||| |||| || ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 410 ACAATTACCCGCGATGAAACATTCGGGTTTGCAGCTGCAAAATCAAGATTCAACCTCATC 469
Query 177 ACAATCTACT---GAAGAATCAGGCGGCGGGGAAGTTGCAAGCTTTGAAAAACATAACCG 233
|||||||||| ||||||||||||||||| |||||||||||||||| | || |||| ||
Sbjct 470 ACAATCTACTGAAGAAGAATCAGGCGGCGGTGAAGTTGCAAGCTTTGGAGAATATAAGCG 529
Query 234 TTATGGATGCAGCATTGTGAATACCAATCTCTCAGGTTACATCGAAAACCCGGGAAAGCC 293
|||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||
Sbjct 530 TTATGGATGCAGCATTGTTAATAACAATCTCTCAGGTTACATCGAAAACTTGGGAAAGCC 589
Query 294 TATTGAAAATTATACTAAGTCAACTACTACCTCGTCGATGGTGTCTCAAGATTCTGTGTT 353
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 590 TATTGAAAATTATACTAAGTCAATTACTACCTCGTCGATGGTGTCTCAAGACTCTGTGTT 649
Query 354 TCCTGCTCCTACTTCTGGTCAAATATCTTGGTCTCTTCAATGTGCTGAAACATCACATTT 413
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 650 TCCTGCTCCTACTTCTGGTCAAATATCTTGGTCTCTTCAATGTGCTGAAACGTCACATTT 709
Query 414 CAATGGTTTCTTGGCTCCTGAATATACACCAGCACCAACGGTGCTGCCACATTTAGAGAT 473
||||||||||||||||||||||||| || || ||||||||| ||||||||||||||||||
Sbjct 710 CAATGGTTTCTTGGCTCCTGAATATGCATCAACACCAACGGCGCTGCCACATTTAGAGAT 769
Query 474 GATGGGTTTGGTTTCTTCAAGAGTGCCATTGCCTCATAACATTCAAGAGAATGAACCAAT 533
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 770 GATGGGTTTGGTTTCTTCAAGAGTGCCATTGCCTCATCACATTCAAGAGAATGAACCAAT 829
Query 534 ATTTGTCAATGCGAAACAGTATCATGCGATTCTCCGTCGCAGGAAGCACCGTGCTAAACT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 ATTTGTCAATGCGAAACAGTATCATGCGATTCTCCGTCGCAGGAAGCACCGTGCTAAACT 889
Query 594 CGAAGCTCAGAACAAACTCATCAAATGCCGTAAACCGTACCTTCATGAGTCTCGCCATCT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CGAAGCTCAGAACAAACTCATCAAATGCCGTAAACCGTACCTTCATGAGTCTCGCCATCT 949
Query 654 TCATGCTTTAAAGAGAGCTAGAGGCTCCGGTGGACGTTTCCTCAATACAAAGAAGCTTCA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TCATGCTTTAAAGAGAGCTAGAGGCTCCGGTGGACGTTTCCTCAATACAAAGAAGCTTCA 1009
Query 714 AGAATCAGCAAACTCACTGTGTTCTTCTCAAATGGCAAATGGACAGAATTTCTCTATGAG 773
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1010 AGAATCATCAAACTCACTGTGTTCTTCTCAAATGGCAAATGGACAAAATTTCTCTATGAG 1069
Query 774 CCCTCGCGGGGGTGGAAGCGGAATCGGGTCTAGTTCGATCACACTGAGCTCCAATTCGAA 833
||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 1070 CCCTCACGGTGGTGGAAGCGGAATCGGGTCTAGTTCGATCTCACCGAGCTCCAATTCAAA 1129
Query 834 CCGTATCAACATGTTCCAAAACCCGCAGTTCAGCTTCTCAGGTTATCCGTCAACACACCA 893
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1130 CTGTATCAACATGTTCCAAAACCCGCAGTTCAGATTCTCAGGTTATCCGTCAACACACCA 1189
Query 894 TGCCTCAGCTCTCATGTCAGGGACTTGA 921
||||||||||||||||||||||||||||
Sbjct 1190 TGCCTCAGCTCTCATGTCAGGGACTTGA 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5