BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914608
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54180.1 | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like 3... 821 0.0
> AT1G54180.1 | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like
3 | chr1:20227291-20230237 FORWARD LENGTH=1892
Length=1892
Score = 821 bits (444), Expect = 0.0
Identities = 502/530 (95%), Gaps = 3/530 (1%)
Strand=Plus/Plus
Query 509 GTCGTGAGATGTTCAATAAATGGCAAGCTCAAAGATGGTGGGTGGAGAATTTCGAGAAGG 568
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 857 GTCGTGAGATGTTTAATAAATGGCAAGCTCAAAAATGGTGGGTGGAGAATTTCGAGAAGG 916
Query 569 TCATGGAGTTATACAACGTGCAGCAGTTTAATCAGCAGAGCGTGCCGCTTCCAACTCCTC 628
||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||
Sbjct 917 TCATGGAGTTATACAACGT---GCAGTTCAATCAGCAGAGCGTACCGCTTCAAACTCCTC 973
Query 629 CTGTATCTGAACATGGGGTCTCACAAATACAGTCCGCGAAGGACAGTCCTGTAACTCCAC 688
||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 974 CTGTATCTGAAGATGGGGGCTCACAAATACAGTCCGTGAAGGACAGTCCTGTAACTCCAC 1033
Query 689 CTCTGGAAAGAGAGCGACCTCGCAGCAATATTCCAGGCTCTTCTGGTCTTGCTTCAACAC 748
| ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |
Sbjct 1034 CGCTGGAAAGAGAGCGACCTCACCGCAATATTCCAGGCTCTTCTGGTTTTGCTTCAACCC 1093
Query 749 CAAAGCTCTCTAGCATCAGCGGAACCAAGACTGAAACATCATCAATCGATGGTTCTGCTA 808
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1094 CAAAGCTCTCTAGCATCAGCGGAACCAAGACTGAAACATCATCTATCGATGGTTCTGCTA 1153
Query 809 GAAGTAGCTCAGTAGATCGATCTGAGGAGGTCTCAGTGAGTAACGCAAGCGACATGGAAA 868
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1154 GAAGTAGCTCGGTAGATCGATCCGAGGAGGTCTCAGTGAGTAACGCAAGTGACATGGAAA 1213
Query 869 GTGAATGGGTAGAACAAGATGAGCCTGGTATCTATATTACTATCAGAGCTTTACCAGATG 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 GTGAATGGGTAGAACAAGATGAGCCTGGTATCTATATTACTATCAGAGCTTTACCAGATG 1273
Query 929 GTAATCGCGAGCTTAGACGCGTTCGATTCAGCCGAGACAAGTTTGGGGAAACACAGGCGA 988
| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1274 GAAATCGCGAGCTTAGGCGAGTTCGATTCAGCCGAGACAAGTTTGGGGAAACACATGCGA 1333
Query 989 GGTTGTGGTGGGAACAGAACAGAGCTCGGATACAACAGCAATACTTGTGA 1038
|||| ||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1334 GGTTATGGTGGGAACAAAACAGAGCGCGTATACAACAGCAATACTTGTGA 1383
Score = 769 bits (416), Expect = 0.0
Identities = 478/509 (94%), Gaps = 0/509 (0%)
Strand=Plus/Plus
Query 1 ATGCTGACTTGTATAGCGTGCACGAAGCAGCTTAACACCAACAATGGCGGATCTACTCGA 60
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 ATGCTGACGTGTATAGCTTGCACGAAGCAGCTTAACACCAACAATGGCGGATCTACTCGA 330
Query 61 GAAGAAGATGAAGAAGACGGAGTCATTGGGACTCCTAGGACTAAGCAGGCGATTAAATCA 120
||||||||||||||| ||||||| ||||| || |||||||||||||| ||||||||||||
Sbjct 331 GAAGAAGATGAAGAACACGGAGTTATTGGTACCCCTAGGACTAAGCAAGCGATTAAATCA 390
Query 121 CTGACGTCACAGCTAAAAGACATGGCAGTAAAAGCTTCAGGGGCATATAAAAACTGCAAA 180
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 391 CTGACGTCACAGCTAAAAGACATGGCAGTAAAGGCTTCAGGGGCATACAAAAACTGCAAA 450
Query 181 CCGTGTTCTGGGACATCAAAGCGGAATCAGAATCGAAACTATGCTGATTCGGATGTTGCT 240
||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 451 CCGTGTTCTGGGACAACAAACCGGAATCAGAATCGAAACTATGCTGATTCGGATGCTGCT 510
Query 241 TCGGATTCTGGGAGATTTCATTATGCATACCAGAGAGCTGGGACTGCAAGCTCAACTCCA 300
|| |||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct 511 TCAGATTCTGGAAGATTCCATTATTCATACCAGAGAGCTGGGACTGCAACCTCAACTCCT 570
Query 301 AAGATTTGGGGGAATGATATGGAGTCCAGGTTAAAAGGGCTTTCTAGTGAAGAAGGTACA 360
||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 571 AAGATTTGGGGGAATGAAATGGAGTCAAGGTTAAAAGGGATTTCTAGTGAAGAAGGTACA 630
Query 361 CCTACTTCCATGAGTGGCCGAACGGAATCCATAGTGTTCATGGAGGAGGATGAGGCCAAG 420
||||| || |||||||| ||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 631 CCTACGTCTATGAGTGGTCGAACAGAATCCATAGTGTTCATGGAGGATGATGAGGTCAAG 690
Query 421 GAATGGGTTGCGCAAGTGGAGCCTGGTGTTCTCATCACATTTGTGTCATTGCTTCAAGGA 480
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 691 GAATGGGTTGCTCAAGTGGAGCCTGGTGTTCTCATCACATTTGTGTCATTGCCTCAGGGA 750
Query 481 GGGAATGATCTAAAGAGAATTCGGTTCAG 509
||||||||||| |||||||||||||||||
Sbjct 751 GGGAATGATCTTAAGAGAATTCGGTTCAG 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5