BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914615
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54220.1 | Symbols: | Dihydrolipoamide acetyltransferase, l... 2039 0.0
AT3G13930.1 | Symbols: | Dihydrolipoamide acetyltransferase, l... 1280 0.0
> AT1G54220.1 | Symbols: | Dihydrolipoamide acetyltransferase,
long form protein | chr1:20246130-20250310 REVERSE LENGTH=2052
Length=2052
Score = 2039 bits (1104), Expect = 0.0
Identities = 1192/1236 (96%), Gaps = 0/1236 (0%)
Strand=Plus/Plus
Query 418 GCCAGGTGGCTGAAAAAAGAAGGTGATAAAGTTGCTCCTGGGGAAGTACTCTGTGAAGTT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GCCAGGTGGCTGAAAAAAGAAGGTGATAAAGTTGCTCCTGGGGAAGTACTCTGTGAAGTT 546
Query 478 GAAACTGACAAAGCAACCGTGGAAATGGAATGCATGGAAGAGGGATATCTCGCCAAGATT 537
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 547 GAAACTGACAAAGCAACTGTCGAAATGGAATGCATGGAAGAGGGCTATCTCGCCAAGATT 606
Query 538 GTAAAGGCGGAGGGTTCAAAAGAAATTCAAGTCGGCGAGGTAATTGCTATTACAGTTGAA 597
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GTAAAGGCGGAAGGTTCAAAAGAAATTCAAGTCGGCGAGGTAATTGCTATTACAGTTGAA 666
Query 598 GATGAAGAGGACATTGGAAAGTTCAAAGATTACACCCCATCATCTACTGCTGATGTCGCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 667 GATGAAGAGGACATTGGAAAGTTCAAAGATTACACCCCATCATCTACTGCTGATGCCGCT 726
Query 658 CCTCCTAAAGCAGAACCAACTCCTGCCCCACCAAAGGAAGAGAAGGTTGAACAGCCATCA 717
||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 727 CCTACAAAAGCAGAACCAACTCCTGCCCCACCAAAGGAAGAGAAGGTCAAACAGCCATCA 786
Query 718 TCGCCTCCTGAACTGAAGGCTTCCAAGCCTAGCGTACCTCCCACAGGAGATCGTGTTTTT 777
||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 787 TCGCCTCCTGAACCGAAGGCCTCCAAGCCTAGCACACCTCCCACAGGAGATCGTGTTTTT 846
Query 778 GCTAGTCCTCTTGCAAGAAAGTTGGCTGAAGATAAGAATGTGCCTCTCGCAAACATCAAA 837
||||||||||||||||||||||||||||||||||| || ||||||||| || ||||| ||
Sbjct 847 GCTAGTCCTCTTGCAAGAAAGTTGGCTGAAGATAATAACGTGCCTCTCTCAGACATCGAA 906
Query 838 GGCACAGGTCCTGAAGGACGAATAGTGAAGGCAGATATCGATGAGTATTTAGCTTCAAGT 897
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 907 GGCACAGGTCCTGAAGGACGGATAGTGAAGGCAGATATCGATGAGTATTTAGCTTCAAGT 966
Query 898 GGTAAAGGAGCTATTGCGAAGCCATCTAAGTCAACTGATTCTAATGCCCCAGCTTTGGAC 957
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 967 GGTAAAGGAGCTACTGCGAAGCCATCTAAGTCAACTGATTCTAAGGCCCCAGCTTTGGAC 1026
Query 958 TATGTTGACGCCCCTCATTCTCAGATACGAAAGGTCACAGCATCACGTTTAGCATTCTCA 1017
||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1027 TATGTTGACATCCCTCATTCTCAGATACGAAAGGTCACAGCCTCACGTTTGGCATTCTCA 1086
Query 1018 AAGCAAACTATCCCTCACTATTACTTAACCGTCGATACATGTGTTGATAAACTTATGGGT 1077
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1087 AAGCAAACTATCCCTCACTATTACTTAACCGTCGATACATGTGTTGACAAACTTATGGCT 1146
Query 1078 CTGAGGAGTCAGCTTAATTCATTCCGAGAGGCTTCTGGTGGGAAACGGATATCTGTCAAT 1137
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1147 CTGAGGAGTCAGCTTAATTCATTCAAAGAGGCTTCTGGTGGGAAACGGATATCTGTCAAT 1206
Query 1138 GATCTTGTTGTTAAGGCTGCTGCATTAGCTCTCAGAAAAGTTCCTCAGTGCAATAGTTCA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 GATCTTGTTGTTAAGGCTGCTGCATTAGCTCTCAGAAAAGTTCCTCAGTGCAATAGTTCA 1266
Query 1198 TGGACTGACGATTACATCCGCCAGTTTAAAAATGTGAACATCAACGTCGCAGTGCAGACA 1257
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1267 TGGACTGACGATTACATCCGCCAGTTTAAAAATGTGAACATCAACGTCGCGGTGCAGACA 1326
Query 1258 GAAAACGGGCTGTATGTCCCTGTTGTGAAGGATGCAGACAAGAAGGGTCTGTCCACAATT 1317
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1327 GAAAACGGGCTGTATGTCCCTGTTGTGAAGGACGCAGACAGGAAGGGTCTGTCCACAATT 1386
Query 1318 GGAGAAGAAGTTCGGTTATTGGCTCAAAAAGCAAAAGAGAACAGCTTAAAGCCAGAAGAT 1377
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GGAGAAGAAGTTCGGTTATTAGCTCAAAAAGCAAAAGAGAACAGCTTAAAGCCAGAAGAT 1446
Query 1378 TATGAGGGAGGAACATTTACGGTCTCTAACTTGGGAGGACCTTTTGGCATAAAGCAATTT 1437
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1447 TATGAGGGAGGAACATTTACTGTCTCTAACTTGGGAGGACCTTTTGGCATCAAGCAATTC 1506
Query 1438 TGTGCAGTCGTTAATCCACCTCAAGCCGCCATTCTAGCAGTTGGATCTGCTGGAAAGAGA 1497
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1507 TGTGCAGTCGTTAATCCACCTCAAGCCGCCATTCTAGCAGTTGGATCCGCTGAAAAGAGA 1566
Query 1498 GTTGTCCCTGGTAACGGACCAGATCAATTCAACTTTGCCTCTTACATGCCTGTTACACTG 1557
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1567 GTTGTCCCTGGTAACGGTCCAGATCAATTCAACTTTGCTTCTTACATGCCTGTTACACTG 1626
Query 1558 AGCTGTGACCATCGCGTAGTAGACGGTGCCATTGGAGCTGAGTGGTTGAAAGCATTTAAG 1617
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1627 AGCTGTGACCATCGCGTAGTAGACGGTGCCATTGGAGCTGAATGGTTGAAAGCATTTAAG 1686
Query 1618 GGATACATCGAGAACCCCGAATCTATGTTGCTCTAA 1653
||||||||||||||||| |||||||||| ||||||
Sbjct 1687 GGATACATCGAGAACCCTAAATCTATGTTACTCTAA 1722
Score = 486 bits (263), Expect = 2e-136
Identities = 340/377 (90%), Gaps = 5/377 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTATGCGTCACGCATCATCAATCATTCCAAGAAGTTGAAGGATATTTCGAGTTTA 60
||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||
Sbjct 103 ATGGCTTATGCGTCACGCATCATTAATCATTCCAAGAAGTTGAAGGATGTTTCCACTTTA 162
Query 61 CTGCACCGTGAGCATGCTGCAATGGTCCGCTACTTCTCGAACACTAATCGAACTCCTCTG 120
|| | ||||||| ||||||||| | ||||||||| |||||| ||||||||| ||||||||
Sbjct 163 CTACGCCGTGAGAATGCTGCAACGATCCGCTACTACTCGAATACTAATCGAGCTCCTCTG 222
Query 121 AACAGACAAGATTCTTTCAGTGCCCGTCTTGGTTATTCCCCACTGGAAAGGATTTCCAAA 180
|||||| ||||| |||||| | |||||||||||||| |||||||||| |||||||||| |
Sbjct 223 AACAGAGAAGATACTTTCAATTCCCGTCTTGGTTATCCCCCACTGGAGAGGATTTCCATA 282
Query 181 TGTAGCATTGGCACTGTACCAGTATGC---GGTTTTTCAACTACGAGAACAATTCTTAGT 237
||||||| ||||| |||| || | | |||||||||||||||| ||| ||| ||
Sbjct 283 TGTAGCACCAGCACTTTACCGGTGTCCATTATTTTTTCAACTACGAGATCAAATCTAAGC 342
Query 238 AGTGCAATGGGAAGGCCAATATTTGGAAAAGAATTTTCATGTTAT-ATGCAATCAGCTAG 296
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 343 AGTGCAATGGGAAGGCCAATATTTGGAAAAGAATTTTCATGTT-TGATGCAATCAGCTAG 401
Query 297 AGGATTTTCATCGGGTTCAGATCTGCCTCCTCATCAAGAGATCGGGATGCCTTCTCTCTC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 AGGATTTTCATCGGGTTCAGATCTGCCTCCTCATCAAGAGATCGGGATGCCTTCTCTCTC 461
Query 357 GCCAACAATGACTGAGG 373
|||||||||||||||||
Sbjct 462 GCCAACAATGACTGAGG 478
> AT3G13930.1 | Symbols: | Dihydrolipoamide acetyltransferase,
long form protein | chr3:4595876-4600469 FORWARD LENGTH=2147
Length=2147
Score = 1280 bits (693), Expect = 0.0
Identities = 1077/1261 (85%), Gaps = 32/1261 (3%)
Strand=Plus/Plus
Query 409 GGTACCGTTGCCAGGTGGCTGAAAAAAGAAGGTGATAAAGTTGCTCCTGGGGAAGTACTC 468
|||| | |||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 577 GGTAACATTGCCAGGTGGCTGAAGAAAGAAGGTGATAAAGTTGCTCCTGGTGAAGTGCTT 636
Query 469 TGTGAAGTTGAAACTGACAAAGCAACCGTGGAAATGGAATGCATGGAAGAGGGATATCTC 528
|||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||
Sbjct 637 TGTGAAGTTGAAACTGACAAAGCAACAGTCGAAATGGAATGCATGGAAGAGGGTTTTCTC 696
Query 529 GCCAAGATTGTAAAGGCGGAGGGTTCAAAAGAAATTCAAGTCGGCGAGGTAATTGCTATT 588
|||||||| ||||||| |||||| |||||||||||||||| || ||||| ||||||||
Sbjct 697 GCCAAGATAGTAAAGGAGGAGGGGGCAAAAGAAATTCAAGTTGGGGAGGTGATTGCTATC 756
Query 589 ACAGTTGAAGATGAAGAGGACATTGGAAAGTTCAAAGATTACAC-CCCATCAT-CTACTG 646
||||||||||||||||| || ||| |||||| ||||||||||| ||| |||| | | |
Sbjct 757 ACAGTTGAAGATGAAGATGATATTCAAAAGTTTAAAGATTACACACCC-TCATCCGA-TA 814
Query 647 CTGATGTCGCTCCTCCTAAAGCAGAACCAACTCCTGCCCCACCAAAGGAAGAGAAGGTTG 706
||| | |||| | ||| ||||| ||||| ||||| ||| |||||||||||||||||| |
Sbjct 815 CTGGTCCCGCTGCGCCTGAAGCAAAACCAGCTCCTTCCCTACCAAAGGAAGAGAAGGTAG 874
Query 707 A-ACAGCCA-TCA-TCGCCTCCTGAA-CTGAAGGCT-TCCAAGCCTAGCGT-ACCTCCCA 760
| | ||||| || | | |||||||| | || | | || ||||| ||| | | ||||
Sbjct 875 AGA-AGCCAGCCAGT-G-CTCCTGAAGC-CAA-GATCTCTAAGCCAAGC-TCAGCTCCTT 928
Query 761 CAGGAGATCGTGTTTTTGCTAGTCCTCTTGCAAGAAAGTTGGCTGAAGATAAGAATGTGC 820
||| ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 929 CAGAAGATCGTATTTTTGCCAGTCCTCTTGCAAGAAAGTTGGCTGAAGATAATAATGTAC 988
Query 821 CTCTCGCAAACATCAAAGGCACAGGTCCTGAAGGACGAATAGTGAAGGCAGATATCGATG 880
||||| ||| ||| ||||||||||||||||||||||| ||||||||||| ||| |||| |
Sbjct 989 CTCTCTCAAGCATTAAAGGCACAGGTCCTGAAGGACGGATAGTGAAGGCTGATGTCGAAG 1048
Query 881 AGTAT-TTAGCTTCAAGTGGTAAAGGAGCTATTGCGAAGCCATCTAAGTCAACTG-ATTC 938
| | | ||||||||| | |||||| | ||| ||| || || || ||| ||| || ||||
Sbjct 1049 ATT-TCTTAGCTTCAGGCAGTAAAGAAACTACTGCCAAACCTTCCAAG-CAAGTGGATTC 1106
Query 939 TAATGCCCCAGCT-TTGGACTATGTTGACGCCCCTCATTCTCAGATACGAAAGGTCACAG 997
|| | |||||| ||| ||||||||||| |||||| |||||||||||||||||||||
Sbjct 1107 AAAGGTTCCAGCTCTTG-ACTATGTTGACATCCCTCACACTCAGATACGAAAGGTCACAG 1165
Query 998 CATCACGTTTAGCATTCTCAAAGCAAACTATCCCTCACTATTACTTAACCGTCGATACAT 1057
| |||||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||
Sbjct 1166 CCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACAT 1225
Query 1058 GTGTTGATAAACTTATGGGTCTGAGGAGTCAGCTTAATTCATTCCGAGAGGCTTCTGGTG 1117
||||||| ||| | |||||||| |||||||| || |||||||| | ||||||||| ||||
Sbjct 1226 GTGTTGACAAAATGATGGGTCTTAGGAGTCAACTCAATTCATTTCAAGAGGCTTCCGGTG 1285
Query 1118 GGAAACGGATATCTGTCAATGATCTTGTTGTTAAGGCTGCTGCATTAGCTCT-CAGAAAA 1176
||||| |||||||||| |||||||||||| |||||||||||||| | ||||| | |||||
Sbjct 1286 GGAAAAGGATATCTGTAAATGATCTTGTTATTAAGGCTGCTGCACTGGCTCTTC-GAAAA 1344
Query 1177 GTTCCTCAGTGCAATAGTTCATGGACTGACGATTACATCCGCCAGTTTAAAAATGTGAAC 1236
|||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct 1345 GTTCCTCAGTGCAATAGTTCATGGACAGATGAATACATCCGCCAATTTAAAAATGTGAAC 1404
Query 1237 ATCAACGTCGCAGTGCAGACAGAAAACGGGCTGTATGTCCCTGTTGTGAAGGATGCAGAC 1296
||||| ||||| || || |||||||| ||||| || || ||||| || ||||| || |||
Sbjct 1405 ATCAATGTCGCTGTACAAACAGAAAATGGGCTCTACGTTCCTGTGGTCAAGGACGCGGAC 1464
Query 1297 AAGAAGGGTCTGTCCACAATTGGAGAAGAAGTTCGGTTATTGGCTCAAAAAGCAAAAGAG 1356
||||| || ||||| |||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1465 AAGAAAGGACTGTCTACAATTGGAGAAGAGGTTCGATTCTTGGCTCAAAAAGCAAAAGAA 1524
Query 1357 AACAGCTTAAAGCCAGAAGATTATGAGGGAGGAACATTTACGGTCTCTAACTTGGGAGGA 1416
|||||||| ||||| ||||||||||||||||||||||| || ||||| ||| |||| |||
Sbjct 1525 AACAGCTTGAAGCCGGAAGATTATGAGGGAGGAACATTCACAGTCTCCAACCTGGGGGGA 1584
Query 1417 CCTTTTGGCAT-AAAGCAATTTTGTGCAGTCGTTAATCCACCTCAAGCCGCCATTCTAGC 1475
||||||||||| ||| || || ||||| ||| | |||||||||||||| |||||||||||
Sbjct 1585 CCTTTTGGCATCAAA-CAGTTCTGTGCCGTCATCAATCCACCTCAAGCAGCCATTCTAGC 1643
Query 1476 AGTTGGATCTGCTGGAAAGAGAGTTGT-CCCTGGTAAC-GGACCAGATCAATTCAACTTT 1533
| | |||||||||| |||||||||||| ||| |||| | || ||||| |||| |||| ||
Sbjct 1644 AATCGGATCTGCTGAAAAGAGAGTTGTTCCC-GGTA-CTGGTCCAGACCAATACAACGTT 1701
Query 1534 GCCTCTTACATGCCTGTTACACTGAGCTGTGACCATCGCGTAGTAGACGGTGCCATTGGA 1593
|| || |||||| |||| ||||| ||||||||||| |||||| |||| ||||| ||||||
Sbjct 1702 GCTTCATACATGTCTGTAACACTAAGCTGTGACCACCGCGTAATAGATGGTGCAATTGGA 1761
Query 1594 GCTGAGTGGTTGAAAGCATTTAAGGGATACATCGAGAACCCC-GAATCTATGTTGCTCTA 1652
|| |||||| |||||||||| ||||| |||||||||| |||| |||||||||||||||||
Sbjct 1762 GCCGAGTGGCTGAAAGCATTCAAGGGCTACATCGAGA-CCCCAGAATCTATGTTGCTCTA 1820
Query 1653 A 1653
|
Sbjct 1821 A 1821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5