BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914618
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54240.1 | Symbols: | winged-helix DNA-binding transcriptio... 691 0.0
> AT1G54240.1 | Symbols: | winged-helix DNA-binding transcription
factor family protein | chr1:20252782-20254708 FORWARD LENGTH=1017
Length=1017
Score = 691 bits (374), Expect = 0.0
Identities = 537/613 (88%), Gaps = 21/613 (3%)
Strand=Plus/Plus
Query 100 AACCTTC--CCTATGCCGACCAGCTTGAAAGGGC-C---ATGATAGATACAGAAGACGAC 153
||||||| ||||||| || |||||||||| ||| | ||||||||| ||||||| |||
Sbjct 199 AACCTTCTTCCTATGCTGAACAGCTTGAAA-GGCTCATGATGATAGATTCAGAAGAAGAC 257
Query 154 AGGGGTCCCTCAGGGTTTACGACTGATGAATTGAT-TTATCAGGCTTTAGAAACAGTCTA 212
|||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 258 CGGGGTCCCTCTGGGTTTACGACTGATGAATTGATCTT-TCAGGCTTTAGAAACAGTCTA 316
Query 213 TGCTG-ATGGA-AATGGTCTTGATATCGATG-GAATTTTCAATTTTATCGAGGAAAAGTA 269
| | || | |||||||||||| |||||| | ||||||| ||||||| |||||| | |
Sbjct 317 CG-AGAAT-CATAATGGTCTTGATGTCGATGCG-ATTTTCACTTTTATCAAGGAAAGGAA 373
Query 270 CGAGTTACAGGAAGATTTTAGGGACCGGTTGGAAGTCCAGCTGGGAAATCTAGTTTCTGA 329
|||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||
Sbjct 374 CGAGTTACAGGAAGATTTTAGGGAGCGGTTGGAAAACCAGCTGAGATATCTAGTTTCTGA 433
Query 330 AGGCCAAGTAGA-AATGGTAGGAAACCTCTACAAGATCCCCCATGGTCTTTTTGATACTC 388
|||||||||| | || |||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 434 AGGCCAAGTATACAA-GGTAGGAAACCTCTACAAGATCCCCCGTGGTGTATTTGATACTC 492
Query 389 AAATAGTGTCAGTAGTAGCTTCAAATCTACCACAAACCAT-GAGTCCAGGAGGTTCGACG 447
| | |||||||||| || |||||||| | | ||||||| || ||||| || ||| |||
Sbjct 493 CAGTTGTGTCAGTAGGAGATTCAAATCAAAGAGAAACCATGGA-TCCAGAAGATTCCACG 551
Query 448 GGCGCGAAGACACAAGACACACCAAGTACTTGTGCTTCTTTCGCACCAGCAGCAACAAAA 507
||| | ||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 552 GGCACAAAGGCACAAGACACACCAAGTACTTGTGCTTCTTTCGCACCACCAACAACAGAA 611
Query 508 GAAGATCCTCGGATAGAA-GCAGTAGCAAAAGAAGTCGCAGAGGCAGAACACTTGGAGTT 566
| ||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 612 GTAGATCCTCGGATA-ATCGCATTAGCAAAAGAAGTCGCAGAGGCAGAACACTTGGAGTT 670
Query 567 CGAAGCGAAAGAGGCACAAGAACTTGCAGATAGACACGTCCAGTTGCTAAATTTAGAAAG 626
||||| ||||||||| | ||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 671 GGAAGCAAAAGAGGCATACGAACTTGCAGATAAACACGCCCAGTTGCTAAAATTAGAAAG 730
Query 627 CAACAAAATCTTGCAGTTAGCCGTGGAAATCCTTAACCGATGTGCTAACGGTGAAAAGAT 686
||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 731 CAACATAACCTTGCAGTTAGCCGTAGAAATCCTTAATCGATGTGCTAACGGTGAAAAGAT 790
Query 687 TTTCCTGCTGTAA 699
|||||||||||||
Sbjct 791 TTTCCTGCTGTAA 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5