BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914631
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain ... 2104 0.0
AT3G13810.2 | Symbols: IDD11 | indeterminate(ID)-domain 11 | ch... 573 1e-162
AT4G02670.1 | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domai... 361 1e-98
> AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain
7 | chr1:20560284-20563171 REVERSE LENGTH=1580
Length=1580
Score = 2104 bits (1139), Expect = 0.0
Identities = 1301/1377 (94%), Gaps = 19/1377 (1%)
Strand=Plus/Plus
Query 1 ATGATGAGGAACAGAGACATGTTATTTCATcaacaacaacaacaacaacaaGTGGAAGAG 60
||||||| |||||||||||| |||||||||||||||||||| |||| | || ||||||||
Sbjct 91 ATGATGATGAACAGAGACATATTATTTCATCAACAACAACAGCAAC-A-AA-TGGAAGAG 147
Query 61 AACATGTCGAATCTAACATCAGCTTCAGGAGATCAAGCAAGTGTGTCTTCAGGAAACAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 AACATGTCGAATCTAACATCAGCTTCAGGAGATCAAGCAAGTGTGTCTTCAGGAAACAGA 207
Query 121 ACTGAAACTAGTGGCTCTAACATTAATCAGC--GA-CAAGAACAGTGTTTTGTTCCACAA 177
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 208 ACTGAAACTAGTGGCTCTAACATTAATCAGCATCATCAAGAACAGTGTTTTGTTCCACAA 267
Query 178 TCATCTCTTAAGAGGAAGAGAAATCAACCAGGAAATCCAGACCCAGAAGCAGAAGTGATG 237
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 TCGTCTCTTAAGAGGAAGAGAAATCAACCAGGAAATCCAGACCCAGAAGCAGAAGTGATG 327
Query 238 GCTTTATCACCCAAA-ACACTAATGGCGACAAACAGATTCATATGTGAAGTCTGCAACAA 296
|| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 328 GCCTTATCA-CCAAAGACACTAATGGCGACAAACAGATTCATATGTGAGGTCTGCAACAA 386
Query 297 AGGTTTTCAAAGAGACCAAAACTTGCAACTTCACAAGAGAGGACACAATTTACCATGGAA 356
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 387 AGGTTTTCAAAGAGACCAAAACTTGCAACTTCACAAGAGAGGACATAATCTACCGTGGAA 446
Query 357 GCTTAAGCAAAGATCAACCAAAGATGTGATTAGGAAGAAAGTTTATGTCTGTCCAGAGCC 416
|||||| |||||||||| |||||||||| ||||||||||||||||||| |||||||||||
Sbjct 447 GCTTAAACAAAGATCAAACAAAGATGTGGTTAGGAAGAAAGTTTATGTTTGTCCAGAGCC 506
Query 417 AAGCTGTGTCCATCACCATCCATCAAGAGCTCTCGGTGACTTAACCGGAATCAAGAAGCA 476
| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 507 AGGCTGTGTCCATCACCATCCATCGAGAGCTCTTGGTGACTTAACCGGAATCAAGAAGCA 566
Query 477 TTTCTTCAGAAAACATGGCGAGAAGAAATGGAAATGTGAAAAGTGTTCCAAGAAATATGC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TTTCTTCAGAAAACATGGCGAGAAGAAATGGAAATGTGAAAAGTGTTCCAAGAAATATGC 626
Query 537 GGTGCAATCAGATTGGAAGGCTCATGCTAAGACTTGTGGCACTAAAGAATACAGATGCGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 627 GGTGCAATCAGATTGGAAGGCTCATGCTAAGACTTGTGGCACTAAAGAATACAAATGCGA 686
Query 597 CTGTGGAACTCTCTTTTCTAGGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATGC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 CTGTGGAACTCTCTTTTCTAGGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATGC 746
Query 657 ATTAGCAGAAGAGAGTGCAAGAGCCTTACCAAACCCTATTATGATCCAAGCTTCAGATTC 716
||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 747 ATTAGCAGAAGAGAGTGCAAGAGCCATGCCAAACCCTATTATGATCCAAGCTTCAAATTC 806
Query 717 TCCTCATCATCTTCATCATCATCAAACACAACAAAACATCAGTTTCTCAGCTTCTTCATC 776
||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct 807 TCCTCATCATC---ATCATCATCAAACACAACAAAACATCGGTTTCTC---TTCGTCATC 860
Query 777 CCAAAACATCACCAGCAACAGCAATCTCCGTGGTCCTATGAAGCAAGAAGAATCACATCA 836
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 861 CCAAAACATCATCAGCAACAGCAATCTCCATGGTCCTATGAAGCAAGAAGAATCACAGCA 920
Query 837 TCACT-TCCAAAACATCCCTCCTTGGCTTGTCTCATCAAACCCTAACCCTAATGGCAATA 895
||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 921 TCACTATC-AAAATATCCCTCCTTGGCTTATCTCATCAAACCCTAACCCTAATGGCAACA 979
Query 896 ATGGTAATTTGTTCCCTCCTCTTGCTTCTTCTGCAAACACTGGGCGGTCCAGCTTTCACC 955
|||||||||||||||||||| |||||||||||| || || ||| |||||||||||| ||
Sbjct 980 ATGGTAATTTGTTCCCTCCTGTTGCTTCTTCTGTGAATACCGGGAGGTCCAGCTTTCCCC 1039
Query 956 AGCCATCGCCGGCTATGTCAGCCACAGCTTTGCTCCAGAAAGCAGCTCAAATGGGTTCCA 1015
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1040 ACCCATCGCCGGCTATGTCAGCCACAGCTTTGCTCCAGAAAGCAGCTCAAATGGGTTCTA 1099
Query 1016 CGAAGTCAACAACTCCAGAGGAAGAAGAGAGGTCGTCAAGGTCAAGCTATAATAACTTGA 1075
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1100 CGAAGTCAACAACTCCAGAGGAAGAAGAGAGGTCTTCGAGGTCAAGCTATAATAACTTGA 1159
Query 1076 TCACGACTACAATGGCTGCGATGATGACCTCACCACCTGAACCTGGCTTTGGATTTCAAG 1135
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1160 TCACGACTACAATGGCTGCTATGATGACTTCACCACCAGAACCTGGCTTCGGATTTCAAG 1219
Query 1136 ACTATTACATGATGAATCATCAACATCACGGCGGAGGAGAAGCTTTCAACAGCGCTTTTG 1195
||||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||
Sbjct 1220 ACTATTACATGATGAATCATCAACATCACGGTGGAGGAGAAGCTTTCAACGGTGGTTTTG 1279
Query 1196 TCCCCGGAGAAGACAAGAACGACGTCGTGGACGACGGTGGAGGAGAGACGAGAGATTTCT 1255
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 TCCCCGGAGAAGAGAAGAACGACGTCGTGGACGACGGTGGAGGAGAGACGAGAGATTTCT 1339
Query 1256 TGGGGCTAAGGTCGTTAATGTCGCATAACGAGATTCTAAGCTTCGCTAATAATCTTGGAA 1315
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1340 TGGGGCTAAGGTCGTTAATGTCGCATAACGAGATTCTAAGTTTCGCGAATAATCTTGGCA 1399
Query 1316 ACTGTCTCAACACTTCGGCTTCAGAGCAAGAACAGCAACA---TAGCCTCCAAGATT 1369
|||||||||||||||| ||| |||||||| |||| ||||| ||||| ||||||||
Sbjct 1400 ACTGTCTCAACACTTCTGCTACAGAGCAACAACAACAACAACATAGCCACCAAGATT 1456
> AT3G13810.2 | Symbols: IDD11 | indeterminate(ID)-domain 11 |
chr3:4544364-4547513 FORWARD LENGTH=1898
Length=1898
Score = 573 bits (310), Expect = 1e-162
Identities = 424/478 (89%), Gaps = 11/478 (2%)
Strand=Plus/Plus
Query 208 GGAAATCCAG-ACCCAGAAGCAGAAGTGATGGCTTTATCACCCAAAACACTAATGGCGAC 266
|||||| | | |||||||| |||||||||| ||| ||||||| |||||||||||||| ||
Sbjct 371 GGAAATTCTGTACCCAGAATCAGAAGTGATAGCTCTATCACCAAAAACACTAATGGCAAC 430
Query 267 AAACAGATTCATATGTGAAGTCTGCAACAAAGGTTTTCAAAGAGACCA-AAACTTGCAAC 325
|||||||||| | |||||| |||||||||||||||||||||||||||| || | | || |
Sbjct 431 AAACAGATTCGTGTGTGAAATCTGCAACAAAGGTTTTCAAAGAGACCAGAATC-TACAGC 489
Query 326 TTCACAAG-AGAGGACACAATTTACCATGGAAGCTTAAGCAAAGAT-CAACCAAAGATGT 383
|||| || ||||| |||||| | ||||||||||| || ||||||| ||| |||||| ||
Sbjct 490 TTCA-TAGAAGAGGTCACAATCTGCCATGGAAGCTGAAACAAAGATCCAA-CAAAGAAGT 547
Query 384 GATTAGGAAGAAAGTTTATGTCTGTCCAG-AGCCAAGCTGTGTCCATCACCATCCATCAA 442
||| ||||||||||| ||||| ||||||| || ||||||||||||| || ||||||| |
Sbjct 548 GATAAGGAAGAAAGTGTATGTATGTCCAGAAG-CAAGCTGTGTCCACCATGATCCATCTA 606
Query 443 GAGCTCTCGGTGACTTAACCGGAATCAAGAAGCATTTCT-TCAGAAAACATGGCGAGAAG 501
||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 607 GAGCTCTCGGTGACTTAACCGGAATCAAGAAGCATTTCTGT-AGAAAACATGGTGAGAAG 665
Query 502 AAATGGAAATGTGAAAAGTGTTCCAAGAAATATGCGGTGCAATCAGATTGGAAGGCTCAT 561
|| ||||||||||| |||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 666 AAGTGGAAATGTGATAAGTGTTCAAAGAAATATGCTGTTCAATCAGATTGCAAGGCTCAT 725
Query 562 GCTAAGACTTGTGGCACTAAAGAATACAGATGCGACTGTGGAACTCTCTTTTCTAGGAGG 621
|||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 726 TCTAAGACTTGTGGCACCAAAGAATACAGATGTGACTGTGGCACTCTCTTTTCTAGGAGG 785
Query 622 GATAGTTTCATAACTCATAGAGCATTTTGCGATGCATTAGCAGAAGAGAGTGCAAGAG 679
||||||||||||||||||||||||||||| || ||||| || ||||||| ||||||||
Sbjct 786 GATAGTTTCATAACTCATAGAGCATTTTGTGAAGCATTGGCTGAAGAGACTGCAAGAG 843
> AT4G02670.1 | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domain
12 | chr4:1176190-1178489 REVERSE LENGTH=1209
Length=1209
Score = 361 bits (195), Expect = 1e-98
Identities = 390/482 (81%), Gaps = 22/482 (5%)
Strand=Plus/Plus
Query 208 GGAAATCCAGACCCAGAAGCAGAAGTGATGGCTTTATCACCCAAA-ACACTAATGGCGAC 266
|||||||| || ||||| ||||||||||| || |||||| ||||| ||||| | || ||
Sbjct 178 GGAAATCCTGATCCAGATGCAGAAGTGATCGCATTATCA-CCAAAGACACTTCTTGCAAC 236
Query 267 AAACAGATTCATATGTGAAG-TCTGCAACAAAGGTTTTCAAAGAGACCA-AAACTTGCAA 324
|||||||||| | |||| || | ||||||||||| ||||||||||| || || | | ||
Sbjct 237 AAACAGATTCGTTTGTG-AGATATGCAACAAAGGGTTTCAAAGAGATCAGAATC-TACAG 294
Query 325 CTTCACAAGAGAGGACACAAT-TTACCATGGAAGCTTAAGCA-AAGATCAACCAAAG-AT 381
||||||| |||||| |||||| || ||||||||||| || || |||| | ||||||| |
Sbjct 295 CTTCACAGGAGAGGCCACAATCTT-CCATGGAAGCTGAAACAGAAGAAC-ACCAAAGAAC 352
Query 382 GTGATTAGGAAGAAAGTTTATGTCTGTCCAGAGCCAAGCTGTGTC-CATCACCATCCATC 440
| | ||||||||| || || || |||||| ||| ||||| | ||||||||||||||
Sbjct 353 AACA-AAAGAAGAAAGTCTACGTGTGCCCAGAGACAAACTGTG-CTCATCACCATCCATC 410
Query 441 AAGAGCTCTCGGTGACT-TAACCGGAATCAAGAAGCA-TTTCTTCAGAAAACATGGCGAG 498
|||||||| || || | | || || |||||||| || ||| | ||| |||||||| |||
Sbjct 411 TAGAGCTCTTGGGGA-TCTCACAGGGATCAAGAAACACTTT-TGCAGGAAACATGGAGAG 468
Query 499 AAGAAATGGAAATGTGAAAAGTGTTCCAAGAAATATGCGGTGCAATCAGATTGGAAGGCT 558
|||||||||||||||||||||||||| ||| ||||| || ||||| |||||||| |||
Sbjct 469 AAGAAATGGAAATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCT 528
Query 559 CATGCTAAGA-CTTGTGGCACTAAAGAATACAGATGCGACTGTGGAACTCTCTTT-TCTA 616
||| | |||| || |||| |||| ||| || ||||| ||||| || ||||| ||| || |
Sbjct 529 CATACCAAGATCT-GTGGTACTAGAGATTATAGATGTGACTGCGGCACTCT-TTTCTCGA 586
Query 617 GGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATGCATTAGCAGAAGAGAGTGCAA 676
||| || | ||||||||| |||||||| ||||| ||||||||||||||||| |||||||
Sbjct 587 GGAAAGACACTTTCATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAA 646
Query 677 GA 678
||
Sbjct 647 GA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5