BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914657
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55280.1 | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family... 1646 0.0
> AT1G55280.1 | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family
protein | chr1:20622960-20624630 REVERSE LENGTH=1409
Length=1409
Score = 1646 bits (891), Expect = 0.0
Identities = 1094/1190 (92%), Gaps = 22/1190 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACTGAATCAATTTGTCTCAAGCCCGTATCTTTCGCAAGGTTGACGAAAAACCCA 60
|||||||| |||||||||| ||||||||| |||||||||||| |||| ||||||||||||
Sbjct 98 ATGGCGACGGAATCAATTTTTCTCAAGCCTGTATCTTTCGCATGGTTTACGAAAAACCCA 157
Query 61 TCAAATCAATTTCGTAAAAGAAGAAAACTTTCCTCTCGAATTCATCGTTTTCGATTCGGT 120
| |||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 158 TTGAATCAATTTCATAAAAGAAGACAACTTTCCTATCGAATTCGTCGTTTTCGATTCGGT 217
Query 121 GTAATTTGCTCCAAGTCATCTGATTATCAAGATTTCCAGAGTTATGCAACACCTTTGCGT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 218 GTAATTTGCTCCAAGTCATCTGATTATCAAGATTTCCAGAGTTATGCAAGACCTTTGCGT 277
Query 181 TTGTTATCAGCAGAAGAAGTGAAAGTTTGTAGAGGGAATCCATCTTTCACTGTGAGCGAA 240
| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 278 CTCTTACCAGCAGAAGAAGTGAAAGTTTTTAGAGGGAATCCATCTTTCACTGTGAGCGAA 337
Query 241 ACTCGATCTCTTTATAAGGTTAAGCTAGAGACAAGTAATTTGTTTGGTTCAGGGATTAGT 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 338 TCTCGATCTCTTTATAAGGTTAAGCTACAGACAAGTAATTTGTTTGGTTCAGGGATTAGT 397
Query 301 GATATGAATGCTAGAGTTCTTATATGCTTGATAGACGAAAAGGGCGATTCGGTATTACAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 GATATGAATGCTAGAGTTCTTATATGCTTGATAGACGAAAAGGGCGATTCGGTATTACAG 457
Query 361 ACAATACCTGCGAATTTGTCATCTTTGGATCCAGAGGTTGTGGAAAATGGTGAAAGCTTC 420
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 ACAATACCTCCAAATTTGTCATCTTTGGATCCAGAGGTTGTGGAAAATGGTGAAAGCTTC 517
Query 421 AGGTTTCAGAGAGGCTCTGTTGATGAATTCACATTTGAAGGACCCAAACTCGACAAAATC 480
||||||||||| |||||| ||||||||||| ||||||||||||| ||||||| |||||||
Sbjct 518 AGGTTTCAGAGGGGCTCTCTTGATGAATTCTCATTTGAAGGACCGAAACTCGGCAAAATC 577
Query 481 AGAGCTTTTTGGATTGGTCTTGAGTCTGGTCAATGGAGAATTGGAAGAGTGAGCTTGCGG 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 578 AGAGCTTTTTGGATTGGTCTTGAGTCTGGTCAATGGAGAGTTGGAAGAGTGAGCTTGTGG 637
Query 541 GTGGTTAATTCTCGCGGTGAAGGACTTTCTCTTGGAGAAACCGATGCAGAAAC-TTTCTG 599
||||||||| |||| ||| || | | | || |||| ||| |||| ||| ||
Sbjct 638 GTGGTTAATCCTCGTGGT-AA--A---------G-A-AA-CCGAGGCAAAAACCTTT-TG 681
Query 600 TGACCGATATGATTTTGAAGTTGATGAAATCTTGCTTGGAGAGAGCAGTGACCTATCAAT 659
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 682 TTACCGATATGATTTTGAAGTTGATGAACTCTTGCTTGGAGAGAGCAGTGACCTATCAAT 741
Query 660 GGTGGAACTCAGACCTACCCGTATTACTGAACTCGCCGACTCCGATCAAATCTCTTCGT- 718
||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 742 GGTGGAACTTAGACCTAGCCGTATCACTGAACTCGCTGACTCCGATCAAATCTCTTCGTC 801
Query 719 TTACAGCTGTGGATCTTGACCGTACAACGGTTTCCAATGAGGAAAGCATGGAAGAATACG 778
|| ||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 802 TT-CAGCTCTGAATCTTGACCGTACTATGGTTTCCAATGAGGAAAGCATGGAAGAATACG 860
Query 779 CAAACTTGAAACGCTCTCTGCTTCTCTATGATGCGATTCTCACCCTTCTTGGAAGTTTGG 838
|||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 861 CAAACTTGAAACTCTCTCTGCTACTCTATGATGCGGTTCTCATCCTTCTTGGAAGTTTGG 920
Query 839 TCTTTTCCTTCTCACTTGGTGAAAACTCCGCCATTGCTTTCTTCTTCGGTGGAACAATGG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 921 TCTTTTCCTTCTCACTTGGTGAAAACTCCGCCATTGCTTTCTTCTTCGGTGGAACTATGG 980
Query 899 GATTTTTCTACTTGCTGCTCTTACAGAGATCAGTCGATGAATTGCAAGCACCGGGATCTT 958
||||| ||||||| |||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct 981 GATTTCTCTACTTATTGCTATTACAGAGATCAGTTGATGAACTGCAAGTACCGGGATCTT 1040
Query 959 CTTCATCAGAAAACTCCAATCAAATACTCAGTGG---ACTCAATATTCCGGTTTGGAGCC 1015
|||| || |||||||||||||| |||||||| || |||||| |||||||||| |||||
Sbjct 1041 CTTCTTCCGAAAACTCCAATCAGATACTCAGCGGGGGACTCAAGATTCCGGTTTTGAGCC 1100
Query 1016 TTGCACTGGCCATAGGATTGACTGTTTTAGCCGTGAGAGGTCACATTGGAGGAGATCTCA 1075
||||| ||||||||||||| || ||||| ||| ||||||| |||||||||||||| | |
Sbjct 1101 TTGCATTGGCCATAGGATTAACGGTTTTGGCCATGAGAGGACACATTGGAGGAGAGATGA 1160
Query 1076 CTGCATTTGCAGTCACACCAAAAGAGATTGTGGTGGGGACTTTGGGGTTTCTCGTATGCA 1135
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1161 CTGCATTTGCAGTCACACCAAAAGAGATAGTGGTGGGGACTTTGGGGTTTCTTGTATGCA 1220
Query 1136 AAGTAGCCGTTGTTTTGGCTGCGTTTAAACCCTTGAAGGATGGTTCTTAA 1185
||||||||||| |||||||||| ||||| ||||||||||||||| |||||
Sbjct 1221 AAGTAGCCGTTATTTTGGCTGCCTTTAAGCCCTTGAAGGATGGTCCTTAA 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5