BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914665
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55370.2 | Symbols: NDF5 | NDH-dependent cyclic electron flo... 1526 0.0
> AT1G55370.2 | Symbols: NDF5 | NDH-dependent cyclic electron flow
5 | chr1:20674783-20676351 FORWARD LENGTH=1414
Length=1414
Score = 1526 bits (826), Expect = 0.0
Identities = 999/1080 (93%), Gaps = 21/1080 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTTGCTTCATTCCGTGAATGTTTCACGTAGCACTTTGCCTTTGAGTAGATCTTCA 60
||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 70 ATGGCTTTGGTTCATTACATGAATGTTTCACGTAGCACTTTTCCTTTGAGTAGATCTTCA 129
Query 61 AAGACT-CTTCTGAGCTCATCTTTTGCTTCTTTGCCACTTCAGTTTCATAGAAAC-TTCA 118
|||| | || ||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 130 AAGATTAATT-TGAGCTCATCTTTTGCTTCTTTGCCACTTCAGTTTCATAAAAACATT-A 187
Query 119 AGAGATTAGAATCCTCTGTTCCACCATCAGCTTCTGCAGCAGCTTCACCGGCATTTCCTA 178
|||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 188 AGAGATTAGAATCCTCTGTTCCACCATCAGCTTCAGCTTCAGCTTCACCGGCGTTTCCTA 247
Query 179 TCGACGTTGAGTATCTCCGGCAAGAGTTCTCCGGCCATGGAGCCACTTTCGAAGATATCG 238
| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 248 TTGATGTTGAGTATCTCCGGCGAGAGTTCTCCGGCCATGGAGCCACTTTCGAAGATATTG 307
Query 239 GTGAGACATGTATTGCTAAACTAAAACTGGACAATGGGAGTTCAGCGAATGTGATGTTGA 298
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GTGAGACATGTATTGCTAGACTAAAACTGGACAATGGGAGTTCAGCGAATGTGATGTTGA 367
Query 299 CACGTGGGATGATAACATCTTACAAAGTCAGAGTGTGGCACGGTGGCAAAGTGGAGCTTC 358
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 368 CACGTGGGATGATAACATCGTACAAAGTCCGAGTGTGGCACGGTGGCAAAGTGGAGCTTC 427
Query 359 TTCACACATGGGTCGAACAAGAGGAAGAAGAAGTAGATGTAGTGATACGAGGAGGTGTTT 418
| ||||||||||||||||||||||| | |||| | | ||||||||||||||||||||||
Sbjct 428 TCCACACATGGGTCGAACAAGAGGA-G--GAAG-A-A-GTAGTGATACGAGGAGGTGTTT 481
Query 419 CATCTGCATTTA-ATTCATCAGATTCTGATGATATTAATGAATGGAGACTCCACGGGATC 477
|||||||||||| || |||||||||||||||| || | ||| ||||||||||| ||||||
Sbjct 482 CATCTGCATTTAGAT-CATCAGATTCTGATGAAATCAGTGACTGGAGACTCCAAGGGATC 540
Query 478 AGTGGTGATTCAAAGGATTGTGTTCAAATGGAGCTAAGAAGAAGTGACAAGCAGATCAAA 537
|||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 541 AGTGGTGATTCAAAGGATTGCGTTCAAATGGAGCTGAGAAGAAGTGACAAGAAGATCAAA 600
Query 538 GAGATTGAAATGAAACAGATTATAAGTCTGAGAGAAGAA-ACACTGAGCATTGAGCTTTT 596
||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct 601 GAGATTGAACTGAAACAGATTATTAGTCTGAGAGAA-AACACACTGAGCATTGAGCTTTC 659
Query 597 TGTGACAAACAAAGGCAGTTCACCAATCA-GACTTGAGGGTTGTTCACTTGTAAGTTATT 655
| ||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 660 TATGACAAACAAAGGCATTTCACCAATCAAG-CTTGAAGGTTGTTCACTTGTAAGTTATT 718
Query 656 TGACAGTGAGTACACCAGAAGCTACATATGCAGTTGGGCTAGAAGGTTCATATTTTGTGG 715
||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 719 TGACAGTGAGTACACCAGAAGCTACATATGCAGTTGGACTGGAAGGTTCGGATTTTGTGG 778
Query 716 AAACGACAACGTTTCTTCCTCGTTTCAGAGTAGTTCAAGGAGAGGATGAAGAAGAAAAAA 775
||||||| ||||||||||||||||| | || |||||||| ||| | ||||||||||||
Sbjct 779 AAACGACTCCGTTTCTTCCTCGTTTCGGGGTGGTTCAAGGCGAGAAGGAAGAAGAAAAA- 837
Query 776 CAACCGGGTTTGGTGGGGAAGAAGAGAGCAACTACAAACAGTTGAAC-GAAGAGATGAGT 834
| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 838 C--CCGGGTTTGGTGGGGAAGAAGAGAGCAACTACAAACAGTTGAATAGA-GAGATGAGT 894
Query 835 AGGATTTACACATTTGCTCCAAAGAGCTTCACTGTCATTGATAGGGGACGAAGGAACTCG 894
||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 895 AGGATATACACATGTGCTCCAAAGAGCTTCACTGTCATTGATAGGGGAAGAAGGAACTCG 954
Query 895 GTGATAGTGGGAAGAGAAGGGTTTGAAGAAGTGTACATGTACAGTCCTGGTTCAAGACTT 954
||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 955 GTGGTGGTGGGAAGAGAAGGGTTTGAAGAAGTGTACATGTACAGTCCTGGTTCTAGACTT 1014
Query 955 GAAAGTTACACAAAGTCTGCTTATGTCTGTATTGGACCATCTTCGTTGCTAAATCCAATC 1014
|||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 1015 GAAAGTTACACAAAGTCTGCTTATGTATGTATTGGACCATCTTCATTGCTAAGTCCAATC 1074
Query 1015 TCTTTGGAACCTGCTTGTGTATGGAGAGGTGTGCTACATCTTCATAATCCTAATTCATAA 1074
||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1075 TCTTTGGAATCTGGTTGTGTATGGAGAGGTGTCCTACATCTTCACAATCCTAATTCCTAA 1134
Score = 75.0 bits (40), Expect = 1e-12
Identities = 64/74 (86%), Gaps = 8/74 (11%)
Strand=Plus/Plus
Query 902 TGGGAAGAGAAGGGTTTGAAGAAGTGTACATG---T-A----CAGTCCTGGTTCAAGACT 953
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1201 TGGGAAGAGAAGGGTTTGAAGAAGTGTACATGAACTGATATACAGTCCTGGTTCAAGACT 1260
Query 954 TGAAAGTTACACAA 967
| |||||||| |||
Sbjct 1261 TTAAAGTTACGCAA 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5