BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914671
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55460.1 | Symbols: | DNA/RNA-binding protein Kin17, conser... 577 3e-164
AT5G51795.1 | Symbols: | DNA/RNA-binding protein Kin17, conser... 411 3e-114
> AT1G55460.1 | Symbols: | DNA/RNA-binding protein Kin17, conserved
region | chr1:20707478-20709024 FORWARD LENGTH=1547
Length=1547
Score = 577 bits (312), Expect = 3e-164
Identities = 348/366 (95%), Gaps = 0/366 (0%)
Strand=Plus/Plus
Query 1 ATGAATCGGAAAGACTACTGGTTGTTCGAGGGGATAATTGTGAAGGTAATGAGTAAGGCT 60
|||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 960 ATGAATCGGAAAGATTACTGGTTGTTCGAAGGGATCATTGTGAAGGTGATGAGTAAGGCT 1019
Query 61 TTGGCAGAGAAAGGGTATTATAAGCAAAAGGGTGTTGTGAAGAAAGTGATTGATAAGTAT 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1020 TTGGCAGAGAAAGGGTATTATAAGCAAAAAGGTGTTGTGAAGAAAGTGATTGATAATTAT 1079
Query 121 GTGGGGGAGATCGAAATGCTTGATTCTAAGCATGTGCTGAGAGTTGATCAAGTGGAGCTC 180
|| ||||||||| |||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 1080 GTTGGGGAGATCAAAATGCTTGATTCTAAACATGTGTTGAGAGTTGATCAAAAGGAGCTA 1139
Query 181 GAGACTGTGCTTCCACAGATAGGAGGGATAGTGAAGATAGTGAATGGGGCATATCGTGGT 240
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 1140 GAGACTGTGCTTCCACAAATTGGAGGGATGGTGAAGATAGTGAATGGGGCATATCGTGGT 1199
Query 241 TCGAATGCAAAGTTGTTGGGTGTGGATACAGAGAAGTTCTGTGCTAAAGTGCAAATCGAG 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1200 TCGAATGCAAGGTTGTTGGGTGTGGATACAGAGAAGTTCTGTGCTAAAGTGCAGATCGAG 1259
Query 301 AAAGGTGTCTATGATGGAAGAGTCATCAAGTCCATTGAGTACGAGGACATATGCAAACTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAAGGTGTCTATGATGGAAGAGTCATCAAGTCCATTGAGTACGAGGACATATGCAAACTT 1319
Query 361 GCTTAG 366
||||||
Sbjct 1320 GCTTAG 1325
> AT5G51795.1 | Symbols: | DNA/RNA-binding protein Kin17, conserved
region | chr5:21043083-21044194 REVERSE LENGTH=1044
Length=1044
Score = 411 bits (222), Expect = 3e-114
Identities = 260/279 (93%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 88 AAGGGTGTTGTGAAGAAAGTGATTGATAAGTATGTGGGGGAGATCGAAATGCTTGATTCT 147
|||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 766 AAGGGTGTTGTGAAGAGAGTGATTGATAAGTATGTTGGGGAGATCGAGATGCTTGAATCT 825
Query 148 AAGCATGTGCTGAGAGTTGATCAAGTGGAGCTCGAGACTGTGCTTCCACAGATAGGAGGG 207
||||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 826 AAGCATGTGTTGAGAGTTGATCAGGTGGAGCTAAAGACTGTGCTTCCACAAATAGGAGGG 885
Query 208 ATAGTGAAGATAGTGAATGGGGCATATCGTGGTTCGAATGCAAAGTTGTTGGGTGTGGAT 267
|| |||||||||||||| ||||||||||||||||||||| ||| |||||||| | |||||
Sbjct 886 ATGGTGAAGATAGTGAACGGGGCATATCGTGGTTCGAATACAAGGTTGTTGGATTTGGAT 945
Query 268 ACAGAGAAGTTCTGTGCTAAAGTGCAAATCGAGAAAGGTGTCTATGATGGAAGAGTCATC 327
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 946 ACGGAGAAGTTTTGTGCTAAAGTGCAGATCGAGAAAGGTGTCTATGATGGAAGAGTCATC 1005
Query 328 AAGTCCATTGAGTACGAGGACATATGCAAACTTGCTTAG 366
||||||||||||||||||||||| |||||||||||||||
Sbjct 1006 AAGTCCATTGAGTACGAGGACATTTGCAAACTTGCTTAG 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17191570158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5