BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg914702 Length=2268 Score E Sequences producing significant alignments: (Bits) Value AT1G55740.1 | Symbols: AtSIP1, SIP1 | seed imbibition 1 | chr1:... 3613 0.0 AT4G01265.1 | Symbols: | raffinose synthase family protein / s... 1016 0.0 > AT1G55740.1 | Symbols: AtSIP1, SIP1 | seed imbibition 1 | chr1:20835366-20838778 REVERSE LENGTH=2477 Length=2477 Score = 3613 bits (1956), Expect = 0.0 Identities = 2158/2259 (96%), Gaps = 0/2259 (0%) Strand=Plus/Plus Query 1 ATGACCGTTGGTGCTGGAATCAGCGTCACCGACTCCGATTTGGTGGTGCTAGGTCACCGT 60 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 72 ATGACCGTTGGTGCCGGAATCAGCGTCACCGACTCAGATTTGGTGGTGCTAGGTCACCGT 131 Query 61 GTTCTTCACGGCGTTCCGGAGAATGTTTTAGTTACTCCAGCTTCAAGAAACGCCTTAATC 120 |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| Sbjct 132 GTTCTTCACGGCGTTCCGGAGAATGTCTTAGTTACCCCAGCTTCGGGAAACGCCTTAATC 191 Query 121 GACGGCGCGTTCATCGGCGTCACGTCGGATCAAACCGGAAGCCACCGTGTCTTCTCCCTA 180 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 192 GACGGCGCGTTCATCGGCGTCACGTCAGATCAAACCGGAAGCCACCGTGTCTTCTCCCTT 251 Query 181 GGCAAACTCGAAGACTTAAGGTTTATGTGTGTCTTCCGGTTTAAATTATGGTGGATGACT 240 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 GGCAAACTCGAAGACCTAAGGTTTATGTGTGTCTTCCGGTTTAAATTATGGTGGATGACT 311 Query 241 CAAAGAATGGGTAGTAATGGGAAAGAGATTCCTTGCGAGACTCAATTTCTAATCGTAGAA 300 ||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 312 CAAAGAATGGGGACTAATGGGAAAGAGATTCCTTGTGAGACTCAGTTTCTAATCGTAGAA 371 Query 301 GCAAAGGAAGGGTCTGATTTAGGAGGAGGAGATCAATCTTCTTCGTACGTTGTATTCTTG 360 ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 372 GCAAACCAAGGTTCTGATTTAGGAGGAAGAGATCAATCTTCTTCGTACGTTGTATTCTTA 431 Query 361 CCTATTCTTGAAGGAGATTTTAGAGCTGTTCTTCAAGGGAACGATGCTAATGAGCTTGAG 420 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 432 CCTATACTTGAAGGAGATTTTAGAGCTGTTCTTCAAGGGAACGAGGCTAATGAGCTAGAG 491 Query 421 ATTTGTCTTGAAAGCGGTGATCCAACCGTTGACCAATTCGAAGGCAGTCATTTGTTTTTT 480 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 492 ATTTGTCTTGAAAGTGGTGATCCAACCGTTGACCAATTCGAAGGGAGTCATTTGGTTTTT 551 Query 481 GTGGCTGCTGGCTCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 552 GTGGCTGCTGGCTCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAA 611 Query 541 CATCTTCAGACATTTTCGCACCGAGAGAGAAAGAAAATGCCAGATATGTTGAACTGGTTT 600 |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 612 CATCTTCAAACATTTTCACACCGAGAGAGAAAGAAAATGCCAGATATGTTGAATTGGTTT 671 Query 601 GGTTGGTGCACTTGGGATGCATTCTATACCAATGTCACAGCCAAAGACGTCAAGCAAGGT 660 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 672 GGTTGGTGCACTTGGGATGCATTCTATACCAATGTCACAGCCAAAGACGTCAAGCAAGGA 731 Query 661 CTTGAGAGCCTCAAAGCTGGTGGGGTTACCCCAAAATTTGTCATAATTGATGATGGATGG 720 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 732 CTTGAGAGCCTCAAAGCTGGTGGGGTTACCCCAAAGTTTGTCATAATTGATGATGGATGG 791 Query 721 CAATCTGTTGGCATGGATGAGACTAGTGTAGAATTCAACGCTGATAATGCTGCCAATTTC 780 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 792 CAATCTGTTGGCATGGATGAGACCAGTGTAGAATTCAACGCTGATAATGCTGCCAATTTT 851 Query 781 GCAAATCGGTTAACTCACATCAAGGAGAACCACAAGTTTCAAAAGGACGGCAAAGAAGGC 840 ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||| Sbjct 852 GCAAACCGGTTAACTCACATCAAGGAGAATCATAAGTTTCAAAAGGATGGCAAAGAAGGC 911 Query 841 CACCGGGTGGATGACCCTGCGTTGAGTCTTGGACATGTTATCACAGACATTAAGAGTAAC 900 |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 912 CACCGGGTGGATGACCCTTCATTGAGTCTTGGACATGTTATCACAGACATTAAGAGTAAT 971 Query 901 AATTCACTCAAATATGTTTATGTTTGGCATGCAATAACCGGATATTGGGGAGGAGTCAAA 960 ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 972 AATTCGCTCAAGTATGTTTATGTTTGGCATGCGATAACAGGATATTGGGGAGGAGTCAAA 1031 Query 961 CCAGGTGTTTCTGGTATGAAACACTACGAATCAAAGGTTTCGTATCCAGTTTCTTCACCA 1020 |||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| Sbjct 1032 CCAGGTGTTTCTGGTATGGAACACTACGAATCCAAGGTTGCGTATCCAGTTTCTTCACCA 1091 Query 1021 GGAGTTATGTCCAATGAGAATTGTGGATGTCTAGAAAGCATAACTAAGAATGGACTCGGT 1080 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1092 GGAGTTATGTCCAGTGAGAATTGTGGATGTTTAGAAAGCATAACTAAGAATGGACTTGGT 1151 Query 1081 TTGGTGAATCCTGAGAAAGTCTTTAGCTTCTATAACGACCTTCACTCATACCTTGCATCG 1140 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1152 TTGGTGAATCCTGAGAAAGTCTTTAGCTTCTATAATGATCTTCACTCATACCTTGCATCC 1211 Query 1141 GTTGGGATCGATGGTGTCAAAGTCGATGTCCAAAACATTCTTGAAACTCTTGGAGCTGGA 1200 |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1212 GTTGGGGTCGATGGTGTCAAAGTAGACGTCCAAAACATTCTTGAAACTCTTGGAGCTGGA 1271 Query 1201 CATGGCGGTCGGGTCAAACTTGCAAAGAAGTATCATCAGGCTTTGGAAGCTTCCATTTCA 1260 ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1272 CATGGTGGTCGTGTCAAACTTGCAAAGAAGTATCACCAGGCTTTGGAAGCTTCTATTTCA 1331 Query 1261 AGAAACTTCCCTGACAATGGTATTATCTCTTGCATGAGTCATAACACAGATGGTCTTTAC 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1332 AGAAACTTCCCTGACAATGGTATTATCTCTTGCATGAGTCATAACACAGATGGTCTCTAC 1391 Query 1321 AGCGCAAAAAAGACTGCTGTTATAAGAGCATCAGACGATTTCTGGCCTAGAGATCCTGCA 1380 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1392 AGCGCAAAAAAGACTGCTGTTATAAGAGCATCAGACGATTTCTGGCCTAGAGACCCCGCT 1451 Query 1381 TCGCACACGATCCACATTGCTTCTGTTGCATATAACACACTTTTCCTTGGAGAGTTTATG 1440 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1452 TCACACACGATCCACATTGCTTCTGTTGCATATAACACACTTTTCCTTGGAGAGTTTATG 1511 Query 1441 CAGCCGGATTGGGACATGTTTCATAGTTTGCATCCGATGGCTGAATATCATGCAGCAGCT 1500 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1512 CAGCCGGACTGGGACATGTTTCATAGTTTGCATCCGATGGCTGAATATCATGCTGCAGCT 1571 Query 1501 CGAGCGGTTGGAGGATGTGCCATATATGTCAGCGACAAACCGGGACAACATGACTTCAAC 1560 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1572 CGCGCGGTTGGAGGATGTGCCATATATGTCAGCGACAAACCGGGACAACATGACTTCAAC 1631 Query 1561 CTTTTAAGAAAGCTAGTACTTCGAGACGGTTCCATACTCAGAGCAAAGCTTCCCGGAAGA 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1632 CTTTTAAGAAAGCTAGTACTTCGAGACGGTTCCATACTCAGAGCAAAGCTTCCCGGAAGA 1691 Query 1621 CCAACCAGTGATTGCTTCTTCAGTGATCCAGTCAGAGACAATAAAAGTCTTATGAAAATA 1680 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1692 CCAACCAGTGATTGCTTCTTCAGTGATCCAGTCAGAGACAATAAAAGTCTTCTGAAAATA 1751 Query 1681 TGGAACCTCAACGAATTCACTGGCGTTATCGGAGTCTTCAACTGCCAAGGCGCTGGATGG 1740 |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1752 TGGAACCTGAACGAATTCACTGGCGTTATTGGAGTTTTCAACTGCCAAGGCGCTGGATGG 1811 Query 1741 TGTAAGAACGAGAAGAGATACCTAATCCATGACCAAGAACCTGGGACAATTACTGGTTAT 1800 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | Sbjct 1812 TGTAAGAACGAGAAGAGATACCTAATCCATGACCAAGAACCTGGGACCATTTCTGGTTGT 1871 Query 1801 GTCCGAACCAATGATGTTCATTATCTCCATAAAGTCGCAGCCTTTGAATGGACAGGAGAT 1860 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1872 GTCCGAACCAATGATGTTCATTATCTTCATAAAGTAGCAGCCTTTGAATGGACAGGAGAT 1931 Query 1861 TCTATCGTCTATTCTCATCTCAGAGGAGAGTTAGTGTATCTCCCAAATGATACATCTTTA 1920 || || |||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1932 TCCATTGTCTATTCCCATCTCAGAGGAGAGTTAGTGTATCTCCCAAAAGATACATCTTTA 1991 Query 1921 CCAGTCACATTGAAGTCACGTGAATACGAAGTTTTCACGGTGGTTCCGGTGAAGAAATTT 1980 ||||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1992 CCAGTGACATTGATGCCACGTGAATACGAAGTTTTCACGGTGGTTCCGGTGAAGGAATTT 2051 Query 1981 TCCGATGGAAGTAAATTTGCCCCGGTGGGACTAATGGAGATGTTTAATTCTGGAGGAGCC 2040 |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 2052 TCCGATGGAAGTAAATTTGCACCGGTGGGGCTTATGGAGATGTTTAATTCTGGAGGAGCC 2111 Query 2041 ATTGTGAGTTTAAGATACGATGAAGATGGGACTAACTTTGTCGTTAGGATGAAACTTCGA 2100 ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 2112 ATTGTGAGTTTAAGATACGATGACGAGGGGACTAAATTTGTCGTTAGGATGAAACTTCGA 2171 Query 2101 GGTAGTGGTTTGGTTGGGGTTTACTCATCGGTTCGACGACCACGAAATGTTAAGGTGGAT 2160 || |||||||||||||| |||||||| || |||||||||||||||| ||||| ||||||| Sbjct 2172 GGCAGTGGTTTGGTTGGTGTTTACTCGTCCGTTCGACGACCACGAAGTGTTACGGTGGAT 2231 Query 2161 TCAGACGGTGTGGAGTACCGGTATCAACCGGAATCCGGTTTGGTTACGTTTGCTTTAGGA 2220 ||||||| ||||||||||||||| |||||||||||||||| ||||||||| |||||||| Sbjct 2232 TCAGACGACGTGGAGTACCGGTATGAACCGGAATCCGGTTTAGTTACGTTTACTTTAGGA 2291 Query 2221 GTTCCGGAGAAAGAATTGTATCTTTGGGACGTGGTCATC 2259 ||||||||||||||||||||||| ||||||||||||||| Sbjct 2292 GTTCCGGAGAAAGAATTGTATCTGTGGGACGTGGTCATC 2330 > AT4G01265.1 | Symbols: | raffinose synthase family protein / seed imbibition protein-related | chr4:529822-531774 REVERSE LENGTH=1274 Length=1274 Score = 1016 bits (550), Expect = 0.0 Identities = 787/895 (88%), Gaps = 42/895 (5%) Strand=Plus/Plus Query 192 AGACTTAAGGTTTATGTGTGTCTTCCGGTTTAAATTATG-GTGGATGACTCAAAGAATGG 250 |||| ||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||| Sbjct 27 AGACCTAAGGTTTATGTGTGTCTTCCAGTTTAAATTATGTGTGGGTGACTCAGAGAATGG 86 Query 251 GTAGTAATGGGAAAGAGATTCCTTGCGAGACTCAATTTCTAATCGTAGAAGCAAAGGAAG 310 | | ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct 87 GGACTAATGGGAAAGAGATTCCTTGTGAGACTCAGTTTCTAATCGTAGAAGCAAACAAAG 146 Query 311 GGTCTGATTTAGGAGGAGGAGATCAATCTTCTTCGTACGTTGTATTCTTGCCTATTCTTG 370 | |||| |||||||||||||||| |||| ||||| |||||||||||||||||||| |||| Sbjct 147 GTTCTGGTTTAGGAGGAGGAGATGAATCGTCTTCCTACGTTGTATTCTTGCCTATACTTG 206 Query 371 AAGGAGATTTTAGAGCTGTTCTTCAAGGGAACGATGCTAATGAGCTTGAGATTTGTCTTG 430 |||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| Sbjct 207 AAGGAGATTTTAGAGCTGTTTTTCAAGGGAACGAGGCTAATGAGCTAGAGATTTGTCTTG 266 Query 431 AAAGCGGTGATCCAACCGTTGACCAATTCGA-AGGCAGTCATTTGTTTTTTGTGGCTGCT 489 |||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| Sbjct 267 AAAGTGGTGATCCAACCGTTGACCAATTCGAGAGG-AGTCATTTGGTTTTTGTGGCTGCT 325 Query 490 GGCTCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGT-TGAACAACATCTT-- 546 ||||| || | | || || || | || |||| | | | || | | | || Sbjct 326 GGCTCTGATGC-TAAGA-ATC-TTTGC----CTTTCAATGAT-TATGCAGGGC-TTTTGA 376 Query 547 -CAGACATTTTCGCACCGAGAGAGAAAGAAAATGCCAGATATGTTGAACTGGTTTGGTTG 605 || |||||||| ||||||||||||||||||||||||||||||||||||||| | || Sbjct 377 ACA-ACATTTTCACACCGAGAGAGAAAGAAAATGCCAGATATGTTGAACTGG--T--TT- 430 Query 606 GTGCACTTGGGATGCATTCTATACCAATGTCACAGCCAAAGACGTCAAGCAAGGTCTTGA 665 | | || || |||| || | ||| || | | | || |||||||||| Sbjct 431 G-G---TT-GG-TGCA--CT-T-GGGATG---CATTC---TA--T--AGAAAGGTCTTGA 470 Query 666 GAGCCTCAAAGCTGGTGGGGTTACCCCAAAATTTGTCATAATTGATGATGGATGGCAATC 725 ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| Sbjct 471 GAGCCTCAAAGCTGGTGTGGTTACTCCAAAGTTTGTCATAATTGATGATGGATGGCAATC 530 Query 726 TGTTGGCATGGATGAGACTAGTGTAGAATTCAACGCTGATAATGCTGCCAATTTCGCAAA 785 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 531 TGTTGGCATGGATGAGACCAGTGTAGAATTCAACGCTGATAGTGCTGCCAATTTCGCAAA 590 Query 786 TCGGTTAACTCACATCAAGGAGAACCACAAGTTTCAAAAGGACGGCAAAGAAGGCCACCG 845 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 591 CCGGTTAACTCACATAAAGGAGAAACACAAGTTTCAAAAGGACGGCAAAGAAGGCCACCG 650 Query 846 GGTGGATGACCCTGCGTTGAGTCTTGGACATGTTATCACAGACATTAAGAGTAACAATTC 905 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 651 GGTGGATGACCCTGCATTGAGTCTTGGACATGTTATCACAGATATTAAGAGTAACAATTC 710 Query 906 ACTCAAATATGTTTATGTTTGGCATGCAATAACCGGATATTGGGGAGGAGTCAAACCAGG 965 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 711 ACTCAAATATGTTTATGTTTGGCATGCGATAACCGGATATTGGGGAGGAGTCAAACCAAG 770 Query 966 TGTTTCTGGTATGAAACACTACGAATCAAAGGTTTCGTATCCAGTTTCTTCACCAGGAGT 1025 ||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||| | Sbjct 771 TGTTTCTGGTATGGAGCACTACGAATCAAAGGTGGCGTATCCAGTTTCTTAACCAGGAAT 830 Query 1026 TATGTCCAATGAGAATTGTGGATGTCTAGAAAGCATAACTAAGAATGGACTCGGT 1080 |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| Sbjct 831 TATGTCCAATGAGAATTGTGGATGCCTAGAAAGTATAACTAAGAATGGACTTGGT 885 Score = 254 bits (137), Expect = 4e-66 Identities = 227/265 (86%), Gaps = 27/265 (10%) Strand=Plus/Plus Query 1360 TTCTGGCCTAGAGATCCTGCATCGCACACGATCCACATTGCTTCTGTTGCATATAACACA 1419 ||||||| ||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct 1005 TTCTGGCATAGAGATCCGGCTTCACACACGATCCACATTGCTTCTGTTGCATATAACACA 1064 Query 1420 CTTTTCCTTGGAGAGTTTATGCAGCCGGATTGGGACATGTTTCATAGTTTGCATCCGATG 1479 ||||||||||||||||||||||||||||| |||||||| ||| | || | | Sbjct 1065 CTTTTCCTTGGAGAGTTTATGCAGCCGGACTGGGACAT-TTT----G----CA-C-G--- 1110 Query 1480 GCTGAATATCATGCAGCAGCTCGAGCGGTTGGAGGATGTGCCATATATGTCAGCGACAAA 1539 | | ||||| |||||| ||||||||||||||||| ||||||| ||||||| Sbjct 1111 -C--A-------GCAGC---TCGAGCAGTTGGAGGATGTGCCATTTATGTCAACGACAAA 1157 Query 1540 CCGGGACAACATGACTTCAACCTTTTAAGAAAGCTAGTACTTCGAGACGGTTCCATACTC 1599 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1158 CCGGGACAACATGACTTCAACCTTTTAAGAAAGCTAGTACTTCAAGACGGTTCCATACTC 1217 Query 1600 AGAGCAAAGCTTCCCGGAAGACCAA 1624 ||| |||||||||||||||||||| Sbjct 1218 TGAGGAAAGCTTCCCGGAAGACCAA 1242 Score = 180 bits (97), Expect = 6e-44 Identities = 118/128 (92%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 1197 TGGACATGGCGGTCGG-GTCAAACTTGCAAAGAAGTATCATCAGGCTTTGGAAGCTTCCA 1255 ||||| ||| || || ||||||||||||||||||||||| ||||||||||||||||| | Sbjct 876 TGGACTTGGTGG-AGGCGTCAAACTTGCAAAGAAGTATCACCAGGCTTTGGAAGCTTCTA 934 Query 1256 TTTCAAGAAACTTCCCTGACAATGGTATTATCTCTTGCATGAGTCATAACACAGATGGTC 1315 |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 935 TTTCAAGAAACTTCCCTGCCAATGGTATTATCGCTTGCATGAGTCATAACACAGATGGTC 994 Query 1316 TTTACAGC 1323 | |||||| Sbjct 995 TCTACAGC 1002 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 112549621890 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5