BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914712
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2122 0.0
> AT1G55830.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530).
| chr1:20867872-20870338 REVERSE LENGTH=1661
Length=1661
Score = 2122 bits (1149), Expect = 0.0
Identities = 1397/1513 (92%), Gaps = 32/1513 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGAATCGCGAGATATACTGATGTCGACGCTGACGGAATCTGGGGTTTTGATT 60
|||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||
Sbjct 134 ATGGAGGAGGAATCGCGAGATATACTGATGACGACGTTGATTGAATCTGGGGTTTCGATT 193
Query 61 CCCGGAGATTTCTCTTCCGTTGGTGAATTTACTCCGGAGGCGTTAGTATCGATCTCTGCT 120
|||||||||||| |||||||| | ||||||||||||||||||||||||||||| | ||||
Sbjct 194 CCCGGAGATTTCACTTCCGTTAGCGAATTTACTCCGGAGGCGTTAGTATCGATTTGTGCT 253
Query 121 CAGTTGCTAAATCTCATTGACCCATCAGCCTCGTTTTCCGATGAGCTCCCTGATTCTCTC 180
||| |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 254 CAGCTGCTCAATCTCATTGACCCATCGGCGTCGTTTTCCGATGAGCTCCCTGATTCTCTC 313
Query 181 CCCGAAAGGTTTAGGATCTGCACCGATATTGCCCAGTCTGTGAAGAATCTAGGTTACATC 240
||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||
Sbjct 314 CCCGAAAGGTTTAGGATCTGCACCGATATCGCTCATTCTGTGAAGAATCTAGGCTACATC 373
Query 241 AACGACATGAGTTATTATAAGATGTGTTGCTTGCGGCAGTTTCTGCATCCATCTGAAGAT 300
||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 374 AACGATATGAGTTATTAT---A---------------AGTTTCTGCATCCATCTGAAGAT 415
Query 301 GACTCGTATAGGTTGGTTAGGTTTCTGGTTGAGAGGCTTTCGGAGAAAAATGAAGGAAGA 360
|| || |||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 416 GATTCTTATAGGTTGGTTAGGTTTCTGGTTGAGAGGCTTTCGGAGATTAGTGAAGGAAGA 475
Query 361 AAAACTTCT-ACGGCTGGTGATATAGCTAGCAGGCCAAAGATGGAGAATTTCAGAGGTAT 419
||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 476 AAAACTT-TGACGGCTGGTGATATAGCTAGCAGGCCAAAGATGGAGACTTTCAGAGATAT 534
Query 420 TTCAGAAGACATGATGGTGAAGGAGGAAAAGGATGAGACTTTTGATATGCATATACAGAA 479
|||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 535 TTCAGATGACATGATGGTGAATGAGGACAAGGATGAGACTTTCGATATGCATATACAGAA 594
Query 480 GGTTGAAGCTGTCTTAAAAGATCTTACAATGACTAGTGAAATCTCTCATTCACCTGACTC 539
|||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct 595 GGTTGAAGCTGTCTTAAAAGATCTCACAATGACTAGTGAAAAATCTCATTCATCTGACTC 654
Query 540 TCTTGCAAAAAATACATCAACCAATGGTTCCGCCATTGTTGACCTCTTCTCTCAAAACAC 599
||| ||||||||||| ||| ||||| ||| | | || ||| ||| ||||| ||
Sbjct 655 TCTCGCAAAAAATACCTCAGCCAAT-GTT--G--A--CTT---CTC--CTCCCAAAAGAC 702
Query 600 AGATGATCCTGTTACTGATGTACCATCGGATCTTTCTTTGAGAGAGTCATCTGGATATGA 659
||||||||||||||||||||||| || ||||||||||||||||| |||||| ||| |||
Sbjct 703 AGATGATCCTGTTACTGATGTACGTTCTGATCTTTCTTTGAGAGATTCATCTAGATGTGA 762
Query 660 AGAAAATCCTTATGAGGACCCGTCTGCGATAAATTATGAGACTGTTGAGTTACAGAATCA 719
||||||| ||||||| ||||||| || || ||||||||||||||||||||||||||||||
Sbjct 763 AGAAAATTCTTATGAAGACCCGTTTGAGACAAATTATGAGACTGTTGAGTTACAGAATCA 822
Query 720 ACATAATGTACTCTTGGAGGAACTGGAATCTGGATCTTCAGAGCTATACATTCTTGAAAG 779
|||| ||||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 823 ACATGATGTACTCTTGGAGGAACTGGAATCTGGATCTTCACAGCTATGCAGTCTTGAAAG 882
Query 780 CGAGCTGGAGTTGTTGAAGGTGGCTGCGGAGAGGTTATTGGATGACAAACAGCCGGGTGG 839
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 883 CGAGCTGGAGTTGTTGCAGATGGCTGCGGAGAGGTTATTGGATGACAAAAAGCCGGGTGG 942
Query 840 GTCATATCTCGAACAGCTTAATCAACAACTAGTGGTCAAAAGGTGTAATATCATGGATGT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 943 GTCATATCTCGAACAGCTTAATCAACAACTAGTGGTCAAAAGGTGTAATATCATGGATCT 1002
Query 900 TAAAAGGCAATGGGACGATGTAAGGCTGACTTTGGAAACTAAAAAGCTACTTCTCTTGGA 959
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1003 TAAAAAGCAATGGGACGATGTAAGGCTGACTCTGGAAACTAAAAAGCTACTTCTCTTGGA 1062
Query 960 CCAACTTCATGTGGAGGAGCCAGAGGCTAAAGAGAAATTCCATCGGTTGAGAAAGACTGA 1019
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1063 CCAACTTCATGTGGAGGAGCCAGAGGCTAAAGAGAAATTCCATAAGTTGAGAAAGACTGA 1122
Query 1020 ACTGGATTTACAATCTCTCTCATCAGAAATTCAAAAGAGGGAAGATGAACGGTGTAACCT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 ACTGGATTTACAATCTCTCTCATCAGAAATTCAAAAGAGGGAAGATGAACGGTGTAACCT 1182
Query 1080 GTACAATGAACTTGAGAGGCAGCCAAAAGCAGCGCCTCGGAAATCATATATCCATGGGAT 1139
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1183 TTACAATGAACTTGAGAGGCAGCCAAAAGCAGCGCCGAGGAAATCATATATACATGGGAT 1242
Query 1140 TAAAGAAATAACAAAAAATAGCCGTAAACTGGACACTGATATTCAGAGGATTTCAGGGGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TAAAGAAATAACAAAAAATAGCCGTAAACTGGACACTGATATTCAGAGGATTTCAGGGGA 1302
Query 1200 GACCAGGGAGCTACAATTAGAGAGTAACTCAATCCAAGAACGCCTGCACCGGTCATATGC 1259
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1303 GACCAGGGAGCTACAATTAGAGAAAAACTCAATCCAAGAACGCCTGCACCGATCATATGC 1362
Query 1260 TATTGTGGATGAAATGGTTACAAGAGAAGTGAAAAAAGACCCAGCAGTACGACAGGTCTA 1319
| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1363 TGTTGTGGATGAAATGGTTACAAGGGAAGTGAAGAAAGACCCAGCAGTACGACAAGTCTA 1422
Query 1320 CAAGCTACTGACCAGTATCCACAGTATCTTCGAGCAAATCTCTGAGAAAATCCTCATGAC 1379
|||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||
Sbjct 1423 CAAGCTACTGACCAGTATTCACAGTATATTTGAGCAAATCTCTGAGAAAATTCTCATGAC 1482
Query 1380 TGATCGGTTTAGAAGAGAGACAGTCGATTATGAAAAGAAGTTGGGGTCCATCACAGCGCG 1439
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1483 TGATCGGTTTAGAAGAGAAACAGTTGATTATGAAAAGAAGTTGGGGTCCATCACAGCTCG 1542
Query 1440 AGGCATGAGTTTGGAAAAATTAAAAGCCGATCTGGATGCCATCAGGAAAGAAAACGAAAG 1499
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1543 AGGCATGAGTTTGGAGAAATTACAAGCCGATCTGGATGCCATAAGGAAAGAAAACGAAAG 1602
Query 1500 CCTTAAGAAATAA 1512
|||||||||||||
Sbjct 1603 CCTTAAGAAATAA 1615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5