BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914717

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G28930.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   809    0.0  


> AT4G28930.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G12930.1); Has 
12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14271072-14271652 
FORWARD LENGTH=528
Length=528

 Score =  809 bits (438),  Expect = 0.0
 Identities = 478/497 (96%), Gaps = 4/497 (1%)
 Strand=Plus/Plus

Query  1    ATGTCTATGGCCATAAAAATTTCCACCCTTTTCCTCCTCTTCCTTTTGGTTGAATCATGC  60
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1    ATGTTTATGGCCATAAAAATTTCCACCCTTTTCCTCCTCTTCCTTTTGGTTGAACCATGC  60

Query  61   ACCGCAAGATACATACCAGCAGATCTACATGAGGTCAACGAAGAAGGGAGA-ATAGTACT  119
            ||| |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct  61   ACCCCAAGATACATACCAGCAGATCTACATGAGGCCAACGAAGAAGGGAGACA-AGTACT  119

Query  120  AAAGGCACCAGATGAATCAAAGAGGCGCTACTTCCGTTTATTTATATGGGAGGTGGAAGA  179
            ||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct  120  AAAGGTACCAGATGAATCAAAGAGGCGCTACCTCCGTTTATTTAAATGGAAGGTGGAAGA  179

Query  180  TTTGCATCGTGAAGCAGATGAGAAATACCCACTCTGGAAATCTACCAATCACTTGGCCCG  239
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  180  TTTGCAACGTGAAGCAGATGAGAAATACCCACTCTGGAAATCTACCAATCACTTGGACCG  239

Query  240  ATCTTTGTTCCTACTAGAGAAAGCTCAGGATTATGTTCAGCTTTGGGACAAGTGGAGGAA  299
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  240  ATCTTTGTTCCTACTAGAGAAAGCTCAGGATTATGTTCAGCTTTGGGACACGTGGAGGAA  299

Query  300  GGGCCA-ATTTTTTGCCGGAAACCCATACGGTGACTTGCGGAACAATGTTCAAGGGGACT  358
            ||| || || ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  300  GGG-CACATCTTTTGCCGGAAACCCATACGGTGACTTGCGGAACAATGTTCAAGGTGACT  358

Query  359  TATGGCCTAAACACTATGATTACTGTCGTCAATCTGAGGGCACAAATCTCTTGACTTACT  418
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  TGTGGCCTAAACACTATGATTACTGTCGTCAATCTGAGGGCACAAATCTCTTGACTTACT  418

Query  419  TGATGTATGATTTTTGTCGTCAATCTGAGGGTGCAAATCTCCTCAAGTACATGACCTATG  478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  TGATGTATGATTTTTGTCGTCAATCTGAGGGTGCAAATCTCCTCAAGTACATGACCTATG  478

Query  479  GCCTTAGTCCAGAAGCT  495
            |||| ||||||||||||
Sbjct  479  GCCTCAGTCCAGAAGCT  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5