BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914721
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55910.1 | Symbols: ZIP11 | zinc transporter 11 precursor | ... 1548 0.0
> AT1G55910.1 | Symbols: ZIP11 | zinc transporter 11 precursor
| chr1:20906134-20907413 FORWARD LENGTH=1196
Length=1196
Score = 1548 bits (838), Expect = 0.0
Identities = 936/984 (95%), Gaps = 3/984 (0%)
Strand=Plus/Plus
Query 1 Atgtctcgtcctcttgtcttcttcttcttcctctttcttgtcttggtcgtcccttgtctc 60
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 28 ATGTCTCGTTCTCTTG---TCTTCTTCTTCCTCTTTCTTGTCTTGGTCGTCCCTTGTCTC 84
Query 61 tccCATGGAACCGGAGGAGACCACGACGACGATGAGGCTCCGCACGTTAAGAGTTCCGAT 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 85 TCCCATGGAACCGGAGGAGACCACGACGACGATGAGGCTTCGCACGTTAAGAGTTCCGAT 144
Query 121 CTCAAATCTAAATCCTTAATCTCTGTCAAGATCGCATGTCTTGTCATCATCTTTGTCCTC 180
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 145 CTCAAATCCAAATCCTTAATCTCCGTCAAGATCGCATGTCTTGTCATCATCTTTGTCCTC 204
Query 181 ACGTTTATCAGCGGCGTCTCTCCTTATTTCTTGAAATGGAGTCAAGGGTTGTTGGTTCTT 240
||||| || ||||| || ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 205 ACGTTCATAAGCGGTGTATCTCCTTATTTCTTGAAATGGAGCCAAGGGTTTTTGGTTCTT 264
Query 241 GGAACACAATTCGCCGGTGGAGTGTTTCTTGCAACCGCCTTGATGCATTTCTTGTCTGAT 300
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 265 GGTACACAATTCGCCGGAGGCGTGTTTCTTGCAACCGCCTTGATGCATTTCTTGTCGGAC 324
Query 301 GCTGATGAGACGTTTCGTGATTTGTTGACGGCGGAAGGAGAGTCAGAGCCATCTCCGGCT 360
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 325 GCTGATGAGACGTTTCGTGGTTTGTTGACGGCGGAAGGAGAGTCGGAGCCATCTCCGGCT 384
Query 361 TACCCATTTGCTTACATGTTGGCTTGTGCTGGTTTTATGATAACCATGCTTGCTGATTCT 420
|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 385 TACCCATTTGCTTATATGTTGGCTTGTGCTGGTTTTATGTTGACCATGCTTGCTGATTCT 444
Query 421 GTCATCACTCATATCTACTCAAAGACCCAAAACGATTTGGAGCTTCAAGGAGAAGACAAA 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTCATCGCTCATATCTACTCAAAGACCCAAAACGATTTGGAGCTTCAAGGAGAAGACAAA 504
Query 481 TCGAATCAGACGTCAGCAACAACTGAAACATCGATTGGAGATAGCATTCTATTGATCGTA 540
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 505 TCGAATCAGAGGTCAGCAACAACTGAAACTTCGATTGGAGATAGCATTCTATTGATCGTA 564
Query 541 GCTCTCTGTTTTCACTCTGTCTTCGAAGGCATAGCTATTGGTATCTCAGAGACTAAATCA 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 565 GCTCTCTGTTTTCACTCTGTCTTCGAAGGCATAGCTATTGGTATTTCAGAGACTAAATCA 624
Query 601 GATGCTTGGAGAACTCTATGGACAATAACACTCCACAAGATATTTGCAGCGATTGCAATG 660
|||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 625 GATGCTTGGAGAGCTCTCTGGACAATAACACTCCATAAGATATTTGCAGCGATTGCAATG 684
Query 661 GGAATTGCTCTTCTCCGTATGATCCCTGACCGTCCTTTGTTCTCATCAATCACTTATTCT 720
|| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 685 GGGATAGCTCTTCTCCGTATGATCCCTGACCGTCCTTTATTCTCCTCAATCACTTATTCT 744
Query 721 TTCGCATTCGCCATCTCGAGCCCAATCGGTGTTGCTATTGGAATAGTAATCGATGCAACG 780
|||||||||||||||||||||||||| |||||||| || || ||||| ||||||||||||
Sbjct 745 TTCGCATTCGCCATCTCGAGCCCAATTGGTGTTGCCATCGGGATAGTCATCGATGCAACG 804
Query 781 ACTCAAGGATCGGTCGCGGATTGGATTTTCGCAGTGTCGATGAGCTTGGCGTGTGGGGTA 840
|||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 805 ACTCAAGGGTCCATCGCGGATTGGATATTCGCATTGTCGATGAGCTTGGCGTGTGGGGTA 864
Query 841 TTTGTGTATGTCTCGGTGAACCATTTGTTGGCAAAAGGGTATCGACCAAACAAGAAGGTT 900
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 865 TTTGTGTATGTATCTGTGAACCATTTGTTGGCAAAAGGGTATCGACCAAACAAGAAAGTT 924
Query 901 CATGTGGATGAGCCTCGTTATAAGTTTTTGGCTGTGTTGTTTGGAGTTGTTGTCATTGCC 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CATGTTGATGAGCCTCGTTATAAGTTTTTGGCTGTGTTGTTTGGAGTTGTTGTCATTGCC 984
Query 961 ATTGTTATGATATGGGACACTTGA 984
||||||||||||||||||||||||
Sbjct 985 ATTGTTATGATATGGGACACTTGA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5