BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914725
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56000.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1735 0.0
AT1G55980.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1435 0.0
AT1G31900.1 | Symbols: | pseudogene of unknown protein | chr1:... 117 3e-25
> AT1G56000.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr1:20944141-20946718 FORWARD LENGTH=1588
Length=1588
Score = 1735 bits (939), Expect = 0.0
Identities = 1026/1067 (96%), Gaps = 9/1067 (1%)
Strand=Plus/Plus
Query 146 TTTCTGGAGCCGTGTGTGCATCGACTTTGGCAAGGAATGGCGTCTCCGTCACTATCTTCG 205
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 97 TTTCTGGAGCCGTGTGTGCATCGACTCTGGCAAGGAATGGCGTCTCCGTCACTATCTTCG 156
Query 206 A--C---TC-TGG---TCGTGGACGCATGTCTCAAAGGAGAGAGATTGGAGAAGATGGGA 256
| | || ||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 157 ACTCGGGTCGTGGACCTGGTGGACGCATGTCTCAAAGAAGAGAGATTGGAGAAGATGGGA 216
Query 257 AGGAGTTGATGTTCGACCATGGAGCTCCATTTTTCTGTGTGGGCAACTCTGATGCAATGG 316
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 217 AGGAGTTGATGTTCGACCATGGAGCTCCATTTTTCTGTGTGAGCAACTCTGATGCCATGG 276
Query 317 CTCTTGTTCATGAGTGGGAGTCCAGGGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGA 376
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 277 CTCTTGTTCATGAGTGGGAATCCAGAGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGA 336
Query 377 GTTTCGATTATGCCTCCAACAAGTTTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGT 436
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 GTTTTGATTGTGCCTCCAACAAGTTTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGT 396
Query 437 ATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTGTGTCACGAGTCAGGTGTTA 496
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 397 ATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTGTGTAATGAGTCTGGTGTTA 456
Query 497 AAAGTATGTTTGGAACTGGTATTGCCAAGCTGGAATGGTTGGAAGAAGAGATACCATGGT 556
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 457 AGAGTATGTTTGGAACTGGTATTGCCAAGATGGAATGGTTGGAAGAAGAGATACCATGGT 516
Query 557 TGTTGACAGATTCAAAAGGAGAAAATTTGGGTCGTTTCGATGGAGTTGTTGCATCAGATA 616
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 517 TGTTGACAGATTCAAAAGGAGAAAATTTGGGTCGTTTCGATGGAGTGGTTGCATCAGATA 576
Query 617 AAAACATTGTTTCTCCCAGGTTTACTCAAGTAACCGGACTCTCACCGCCTCTGGACTTAA 676
|||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 577 AAAACATTGTTTCTCCAAGGTTTACTCAAGTAACTGGACTCCCACCGCCTCTGGACTTAA 636
Query 677 GTCTAGTCCCAGAGTTGGCGACTAAGCTGCAAAATATTCCTGTTCCACCATGCTTCTCTC 736
|||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 637 GTCTAGTCCCGGAGTTGGCGACTAAGCTGCAAAACATTCCTGTTCTACCATGCTTCTCTC 696
Query 737 TTATGCTAGCTTTCAAGGAGCCGTTGTCTTCGATACCAGTAAAGGGCTTATCTTTCAAGA 796
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 697 TTATGCTAGCTTTCAAGGAGCCGTTGTCCTCGATACCAGTAAAGGGCTTATCTTTCAAGA 756
Query 797 ATTCAGAGATTTTGAGCTGGGCTCACTGTGATAGCACCAAGCCTGGACGGTCTACTGATA 856
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 757 ATTCAGAGATTTTGAGCTGGGCTCACTGTGAAAGCACCAAGCCGGGACGGTCTACTGATA 816
Query 857 GTGAAAGATGGATACTGCATTCTACTCCAGACTATGCCAACAGTGTTATTGCCAAGACGG 916
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 817 GTGAAAGGTGGATACTGCATTCTACTCCAGACTATGCCAACAGTGTTATTGCTAAGACCG 876
Query 917 GCCTCCAAAAGCTATCCAGTGAAACACTAAACAAAATATCCGAAGAGATGTTCAAAGAGT 976
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 877 GCCTCCAAAAGCTATCGAGTGAAACACTAAACAAAATATCTGAAGAGATGTTCAAAGAGT 936
Query 977 TTCAGTGCTCAGGCCTTGTTAGTTCTCTCCCCTTTTTCATGAAAGCCCACAGATGGGGAA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TTCAGTGCTCAGGCCTTGTTAGTTCTCTCCCCTTTTTCATGAAAGCCCACAGATGGGGAA 996
Query 1037 GTGCATTTCCAGCCAAAAGCATAGCCGTAGAGGAGAGGTGCCTTTGGGATAGAAACAGGA 1096
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GTGCGTTTCCAGCCAAAAGCATAGCCGTAGAGGAGAGGTGCCTTTGGGATAGAAACAGGA 1056
Query 1097 ATCTAGCAATCTGTGGAGATTTCTGTGTCAGCCCAAATGTCGAAGGTGCCATTCTCAGTG 1156
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1057 ATCTAGCAATCTGTGGAGATTTCTGTGTCAGCCCAAATGTTGAAGGTGCAATTCTCAGTG 1116
Query 1157 GCTTAGCTGCAGCGTCAAAGCTTTTGCAGACTTCTAGCTGCTTATAG 1203
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GCTTAGCTGCAGCGTCAAAGCTTTTGCAGACTTCTAGCTGCTTATAG 1163
> AT1G55980.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr1:20938899-20941813 REVERSE LENGTH=1401
Length=1401
Score = 1435 bits (777), Expect = 0.0
Identities = 858/896 (96%), Gaps = 9/896 (1%)
Strand=Plus/Plus
Query 146 TTTCTGGAGCCGTGTGTGCATCGACTTTGGCAAGGAATGGCGTCTCCGTCACTATCTTCG 205
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 503 TTTCTGGAGCCGTGTGTGCATCGACTCTGGCAAGGAATGGCGTCTCCGTCACTATCTTCG 562
Query 206 A--C---TC-TGG---TCGTGGACGCATGTCTCAAAGGAGAGAGATTGGAGAAGATGGGA 256
| | || ||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 563 ACTCGGGTCGTGGACCTGGTGGACGCATGTCTCAAAGAAGAGAGATTGGAGAAGATGGGA 622
Query 257 AGGAGTTGATGTTCGACCATGGAGCTCCATTTTTCTGTGTGGGCAACTCTGATGCAATGG 316
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 623 AGGAGTTGATGTTCGACCATGGAGCTCCATTTTTCTGTGTGAGCAACTCTGATGCCATGG 682
Query 317 CTCTTGTTCATGAGTGGGAGTCCAGGGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGA 376
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 683 CTCTTGTTCATGAGTGGGAATCCAGAGGTTTTGTTTCTGAATGGAAACAAGTTTTTGGGA 742
Query 377 GTTTCGATTATGCCTCCAACAAGTTTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGT 436
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GTTTTGATTGTGCCTCCAACAAGTTTCTTGGCATCCAACAGGAAGGGGATGCAAAGAAGT 802
Query 437 ATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTGTGTCACGAGTCAGGTGTTA 496
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 803 ATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTGTGTAATGAGTCTGGTGTTA 862
Query 497 AAAGTATGTTTGGAACTGGTATTGCCAAGCTGGAATGGTTGGAAGAAGAGATACCATGGT 556
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 863 AGAGTATGTTTGGAACTGGTATTGCCAAGATGGAATGGTTGGAAGAAGAGATACCATGGT 922
Query 557 TGTTGACAGATTCAAAAGGAGAAAATTTGGGTCGTTTCGATGGAGTTGTTGCATCAGATA 616
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 923 TGTTGACAGATTCAAAAGGAGAAAATTTGGGTCGTTTCGATGGAGTGGTTGCATCAGATA 982
Query 617 AAAACATTGTTTCTCCCAGGTTTACTCAAGTAACCGGACTCTCACCGCCTCTGGACTTAA 676
|||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 983 AAAACATTGTTTCTCCAAGGTTTACTCAAGTAACTGGACTCCCACCGCCTCTGGACTTAA 1042
Query 677 GTCTAGTCCCAGAGTTGGCGACTAAGCTGCAAAATATTCCTGTTCCACCATGCTTCTCTC 736
|||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1043 GTCTAGTCCCGGAGTTGGCGACTAAGCTGCAAAACATTCCTGTTCTACCATGCTTCTCTC 1102
Query 737 TTATGCTAGCTTTCAAGGAGCCGTTGTCTTCGATACCAGTAAAGGGCTTATCTTTCAAGA 796
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1103 TTATGCTAGCTTTCAAGGAGCCGTTGTCCTCGATACCAGTAAAGGGCTTATCTTTCAAGA 1162
Query 797 ATTCAGAGATTTTGAGCTGGGCTCACTGTGATAGCACCAAGCCTGGACGGTCTACTGATA 856
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1163 ATTCAGAGATTTTGAGCTGGGCTCACTGTGAAAGCACCAAGCCGGGACGGTCTACTGATA 1222
Query 857 GTGAAAGATGGATACTGCATTCTACTCCAGACTATGCCAACAGTGTTATTGCCAAGACGG 916
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1223 GTGAAAGGTGGATACTGCATTCTACTCCAGACTATGCCAACAGTGTTATTGCTAAGACCG 1282
Query 917 GCCTCCAAAAGCTATCCAGTGAAACACTAAACAAAATATCCGAAGAGATGTTCAAAGAGT 976
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1283 GCCTCCAAAAGCTATCGAGTGAAACACTAAACAAAATATCTGAAGAGATGTTCAAAGAGT 1342
Query 977 TTCAGTGCTCAGGCCTTGTTAGTTCTCTCCCCTTTTTCATGAAAGCCCACAGATGG 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 TTCAGTGCTCAGGCCTTGTTAGTTCTCTCCCCTTTTTCATGAAAGCCCACAGATGG 1398
> AT1G31900.1 | Symbols: | pseudogene of unknown protein | chr1:11457877-11458134
FORWARD LENGTH=258
Length=258
Score = 117 bits (63), Expect = 3e-25
Identities = 71/75 (95%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 418 GAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGCATGAACTCTATATCTAAGGCCTTG 477
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 GAAGGGGATGCAAAGAAGTATGTGGGTGTTCCGGGAATGAACTCTATATCTAATGCCTTG 60
Query 478 TGTCACGAGTCAGGT 492
||| ||||||| |||
Sbjct 61 TGTAACGAGTCTGGT 75
Score = 84.2 bits (45), Expect = 3e-15
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 489 AGGTGTTAAAAGTATGTTTGGAACTGGTATTGCCAAGCTGGAATG 533
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 AGGTGTTAAAAGTATGTTTGGAACTGGTATTGCCAAGCTGGAATG 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5