BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914728
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55930.1 | Symbols: | CBS domain-containing protein / trans... 1940 0.0
AT3G13070.1 | Symbols: | CBS domain-containing protein / trans... 1181 0.0
> AT1G55930.1 | Symbols: | CBS domain-containing protein / transporter
associated domain-containing protein | chr1:20918717-20922232
FORWARD LENGTH=2239
Length=2239
Score = 1940 bits (1050), Expect = 0.0
Identities = 1145/1190 (96%), Gaps = 9/1190 (1%)
Strand=Plus/Plus
Query 50 CTCCAAAAAGTGTAGCGGTTCACAATGCTCAAGAGGTTGCAAGGATTGTGGTCAGACCAG 109
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 951 CTCCGAAAAGTGTAGCGGTTCACAATGCTCAAGAGGTTGCCAGGATTGTGGTCAGACCAG 1010
Query 110 TGGCTTGGCTTTCCTTGATATTATATCCTGTTGGAAGAGTAGTGACATATCTTTCGATGG 169
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1011 TGGCGTGGCTTTCCTTGATATTATATCCTGTTGGAAGAGTAGTAACATATCTTTCGATGG 1070
Query 170 GAATTCTGAAAATTCTTTGTTTGAAAGGACGGAGTGAGCCATATGTTACTGAAGATGAAT 229
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1071 GAATTCTGAAAATTCTTGGTTTGAAAGGACGGAGTGAACCATATGTTACTGAAGATGAAT 1130
Query 230 TGAAACTAATGCTACGTGGTGCAGAATTAAGCGGGGCTATAGAAGAGGAAGAGCAGGATA 289
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1131 TGAAACTAATGCTACGTGGTGCAGAATTAAGTGGGGCTATAGAAGAGGAAGAGCAGGATA 1190
Query 290 TGATTGAAAATGTGTTAGAGATAAAGGATACGCATGTTCGAGAGGTGATGACTCCTCTTG 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TGATTGAAAATGTGTTAGAGATAAAGGATACGCATGTTCGAGAGGTGATGACTCCTCTTG 1250
Query 350 TTGATGTAGTTGCAATAGATGGCAGCGGCAGCCTGGTTGACTTCCATAACTTTTGGGTGA 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TTGATGTAGTTGCAATAGATGGCAGCGGCAGCCTGGTTGACTTCCATAACTTTTGGGTGA 1310
Query 410 CCCATCAGTACTCGAGGGTTCCTGTTTTTGAGCAGAGGATTGATAACATAGTTGGTATTG 469
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CCCATCAATACTCAAGGGTTCCTGTTTTTGAGCAGAGGATTGATAACATAGTTGGTATTG 1370
Query 470 CATATGCTATGGATCTCCTAGATTATGTTCCAAAGGGTAAATTGCTTGAAAGTACTACTG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1371 CATATGCTATGGATCTCCTAGATTATGTTCCAAAGGGTAAATTGCTTGAAAGTACCACTG 1430
Query 530 TGGTGGACATGGCACATAAACCTGCATTCTTTGTCCCTGATTCAATGTCAGTTTGGAATG 589
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1431 TGGTGGACATGGCACATAAACCTGCATTCTTTGTCCCTGATTCGATGTCAGTTTGGAATC 1490
Query 590 TTCTTAGAGAGTTTAGAATAAGAAAGGTTCACATGGCAGTTGTTCTTAATGAATACGGTG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1491 TTCTTAGAGAGTTTAGAATAAGAAAGGTTCACATGGCAGTTGTTCTTAATGAATATGGTG 1550
Query 650 GAACCATTGGAATAATAACTCTTGAAGATGTGGTCGAACAGATTGTTGGTGAAATATTTG 709
||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1551 GAACCATCGGAATAGTAACTCTTGAAGATGTGGTCGAAGAGATTGTTGGTGAAATATTTG 1610
Query 710 ATGAAAACGATTCAAAGGAGGAGATTCAGAAGAAAACGGGTTACATCGTGATGAGAGCAG 769
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1611 ATGAAAACGATTCAAAGGAGGAAATTCAGAAGAAAACGGGTTATATCGTGATGAGAGCAG 1670
Query 770 AAGGGATATATGATGTTGATGCCAACACTTCGATTGACCAGTTATCTGAAGAACTTAACA 829
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1671 AGGGGATATATGATGTTGATGCCAACACTTCGATTGACCAGTTATCTGAAGAACTCAACA 1730
Query 830 TAAAGATGTTAGAG-----T-A-T--GAGACAGTCTCAGGTTTTGTCTGTGAGGCCTTTG 880
|||||||| |||| | | | ||||||||||||||||||||||||||||||||||
Sbjct 1731 TAAAGATGGCAGAGGGCCATCAGTATGAGACAGTCTCAGGTTTTGTCTGTGAGGCCTTTG 1790
Query 881 GGTATATCCCAAAGACATGTGAGAGTGTGACGGTAGTTCTTGAAAAGGAAAACTGGGAAG 940
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 GGTATATCCCAAAGACAGGTGAGAGTGTGACGGTAGTTCTTGAAAAGGAAAACTGGGAAG 1850
Query 941 AGAATGATGAACAAGATGAGGGTAAACACGAGAGTCAAGATCAGAAGGAAAAGCACCAAG 1000
|||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||
Sbjct 1851 AGAATGATGAACAAGACGAGGGTAAGCACGAGCGTCAAGATCAGAAGGAGAAGCACCAAA 1910
Query 1001 TTTATAGACTAGAGATACTAGCAGGGAATGCCAGAAAAGTGAGTACAGTCCGGTTCGAAC 1060
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1911 TTTATAGACTAGAGATACTAGCAGGGAATGCCAGAAAAGTGAGTGCAGTCCGGTTCGAAC 1970
Query 1061 GAGTTAATAATATGGATGAAGTGTCAGAGGCGCGAGATGTAAAAAACATGGTTCCCAAGT 1120
|||||| | |||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1971 GAGTTAGTGATATGGATCAAGTGTCAGAGGCCCGAGATGTAAAAAACATGGTTCCCAAAT 2030
Query 1121 TCGTAAGAAAATGGAGCAGTGAGGAAGATACCGATGGTAATCTCCAAGCCAAGAATGCCG 1180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2031 TCGTAAGAAAATGGAGCAGTGAGGAAGATTCCGATGGTAATCTCCAAGCCAAGAATGCCG 2090
Query 1181 TCTTTGATGAGCATCTAATTGCTGAAACTGAAAGTATGAAGAAAGAATAA 1230
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2091 TCTTTGATGAGCATCTAATTGCAGAAACTGAAAGTATGAAGAAAGAATAA 2140
> AT3G13070.1 | Symbols: | CBS domain-containing protein / transporter
associated domain-containing protein | chr3:4191351-4195112
REVERSE LENGTH=2146
Length=2146
Score = 1181 bits (639), Expect = 0.0
Identities = 968/1123 (86%), Gaps = 37/1123 (3%)
Strand=Plus/Plus
Query 50 CTCCAAAAAGTGTAGCGGTTCACAATGCTCAAGAGGTTGCAAGGATTGTGGTCAGACCAG 109
||||||||||||| || || |||||||||||||| |||||||||||||||||||| ||||
Sbjct 788 CTCCAAAAAGTGTTGCTGTGCACAATGCTCAAGAAGTTGCAAGGATTGTGGTCAGGCCAG 847
Query 110 TGGCTTGGCTTTCCTTGA-TATTATATCCTGTTGGAAGAGTAGTGACATATCTTTCGATG 168
|||| ||||||||||| | ||||||||||||| |||||| | || |||||||| || |||
Sbjct 848 TGGCGTGGCTTTCCTT-AGTATTATATCCTGTCGGAAGAATTGTCACATATCTGTCAATG 906
Query 169 GGAATTCTGAAAATTCTTTGTTTGAAAGGACGGAGTGAGCCATATGTTACTGAAGATGAA 228
||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 907 GGAATACTGAAAATTCTTGGTTTGAAAGGACGGAGTGAACCATATGTTACTGAAGATGAG 966
Query 229 TTGAAACTAATGCTACGTGGTGCAGAATTAAGCGGGGCTATAGAAGAGGAAGAGCAGGAT 288
|||||||| |||||| | ||||||||||| || || || || ||||| || |||||||||
Sbjct 967 TTGAAACTGATGCTAAGAGGTGCAGAATTGAGTGGTGCCATTGAAGAAGAGGAGCAGGAT 1026
Query 289 ATGATTGAAAATGTGTTAGAGATAAAGGATACGCATGTTCGAGAGGTGATGACTCCTCTT 348
||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1027 ATGATTGAAAATGTGCTAGAGATTAAGGATACCCATGTTCGAGAGGTGATGACTCCCCTT 1086
Query 349 GTTGATGTAGTTGCAATAGATGGCAGCGGCAGCCTGGTTGACTTCCATAACT-TTTGGGT 407
||||||||||| ||||| || | ||||| ||| || ||||| |||||| | | | |||||
Sbjct 1087 GTTGATGTAGTCGCAATTGACGCCAGCGCCAGTCTAGTTGATTTCCAT-AGTATGTGGGT 1145
Query 408 GACCCATCAGTACTCGAGGGTTCCTGTTTTTGAGCAGAGGATTGATAACATAGTTGGTAT 467
||||||||||||||| ||||| ||||||||||||||| | |||||||| ||||| || ||
Sbjct 1146 GACCCATCAGTACTCAAGGGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAAT 1205
Query 468 TGCATATGCTATGGATCTCCTAGATTATGTTCCA-AAGGGTAAAT-TGCTT-GAAAGTAC 524
|||||||||||||||||| |||||||||||| || |||||| || || || ||||||||
Sbjct 1206 TGCATATGCTATGGATCTTCTAGATTATGTT-CAGAAGGGT-GATCTG-TTAGAAAGTAC 1262
Query 525 TACTGTGGTGGACATGGCACATAAACCTGCATTCTTT-GTCCCTGATTCAATGTCAGTTT 583
| |||||| |||||||||||||||||||||| | ||| ||||||||||||||||| ||||
Sbjct 1263 TTCTGTGGGGGACATGGCACATAAACCTGCA-TATTTCGTCCCTGATTCAATGTCTGTTT 1321
Query 584 GGAATGTTCTTAGAGAGTTTAGAATAAGAAAGGTTCACATGGCAGTTGTTCTTAATGAAT 643
||||| |||||||||| || |||||||||||||||||||||||||||| ||||| ||||
Sbjct 1322 GGAATCTTCTTAGAGAATTCCGAATAAGAAAGGTTCACATGGCAGTTGTCCTTAACGAAT 1381
Query 644 ACGGTGGAACCATTGGAATAATAACTCTTGAAGATGTGGTCGAACAGATTGTTGGTGAAA 703
| |||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1382 ATGGTGGAACGATCGGAATAGTAACTCTTGAAGATGTGGTCGAAGAGATTGTTGGTGAAA 1441
Query 704 TATTTGATGAAAACGATTC-AAAGGAGGAGATTCAGAAGAAAACGGGTTACATCGTGATG 762
| ||||||||||||||||| |||| ||||||||||||||||||| || || || || |||
Sbjct 1442 TTTTTGATGAAAACGATTCCAAAG-AGGAGATTCAGAAGAAAACAGGATATATTGTCATG 1500
Query 763 AGAGCA-GAAGGG-ATATATGATGTTGATGCCAACACTTCGATTGACCAGTTATCTGAAG 820
|||| | || ||| ||||||||||||||||| || || || ||||||||| |||||||||
Sbjct 1501 AGAG-ATGA-GGGCATATATGATGTTGATGCTAATACATCAATTGACCAGCTATCTGAAG 1558
Query 821 AACTTAACAT-AAAGATGTTAGAG----T--A-T--GAGACAGTCTCAGGTTTTGTCTGT 870
|||| || || ||| ||| |||| | | | |||||||||||||| ||||| |||
Sbjct 1559 AACTGAATATGAAA-ATGCCAGAGGGCATTCAGTACGAGACAGTCTCAGGCTTTGTGTGT 1617
Query 871 GAGGCCTTTGGGTATATCCCAAAGACATGTGAGA--GTGTGACGGTAGTTCTTGAAAAGG 928
||||||||||||||||||||||| || || |||| |||||| ||| |||||||||||||
Sbjct 1618 GAGGCCTTTGGGTATATCCCAAAAAC-TG-GAGAAAGTGTGAAGGTTGTTCTTGAAAAGG 1675
Query 929 AAAACTGGGAAGAGAATGATGAACAAGATGAGGGTAAACACGAGAGTCAAGATC-AGAAG 987
||| |||||||||| ||| ||| | || || |||||||| ||||| ||||| | | |||
Sbjct 1676 AAAGCTGGGAAGAGGATGGTGAGGAGGAGGAAGGTAAACAGGAGAGGCAAGAGCCA-AAG 1734
Query 988 GAAAAGCACCAAGTTTATAGACTAGAGATACTAGCAGGGAATGCCAGAAAAGTGAGTACA 1047
|||||| ||||| | |||||| |||||||||||||||||||||| |||||||| ||| |
Sbjct 1735 GAAAAGAACCAAATCTATAGAGTAGAGATACTAGCAGGGAATGCAAGAAAAGTTAGTGCT 1794
Query 1048 GTCCGGTTCGA-ACGAGTTAATAATATGGATGAAGTGTCAGAGGCGCGAGATGTAAAAAA 1106
|||||||| || | |||| || |||||||| ||||||| ||||| | ||||||||||
Sbjct 1795 GTCCGGTTTGAGA-GAGTGAACGATATGGATCAAGTGTCGGAGGCAAGTGATGTAAAAAG 1853
Query 1107 CATGGTTCCCAAGTTCGTAAGAAAATGGAGCAGTGAGGAAGAT 1149
|||||||||||| || ||||| ||||||||||| || ||||||
Sbjct 1854 CATGGTTCCCAAATTTGTAAGGAAATGGAGCAGCGAAGAAGAT 1896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5