BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914735
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13040.1 | Symbols: | myb-like HTH transcriptional regulato... 313 1e-84
AT1G55964.1 | Symbols: | pseudogene of myb family transcriptio... 207 7e-53
> AT3G13040.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr3:4172142-4175227 REVERSE LENGTH=1881
Length=1881
Score = 313 bits (169), Expect = 1e-84
Identities = 287/343 (84%), Gaps = 12/343 (3%)
Strand=Plus/Plus
Query 168 AAAGGCAACTCCTAAGGCTGTTATGAAGC-CAATGAATGTTGAGAGTTTGACCATCTATC 226
|||||| ||||| |||||||||| ||||| | |||||||||||| | ||||| |||||||
Sbjct 1053 AAAGGCCACTCCAAAGGCTGTTAAGAAGCTC-ATGAATGTTGAGGGCTTGACGATCTATC 1111
Query 227 AAGTCAAAAGCCATTTGCAGAAGTATAGACTAGCCAAGTATATGCCAGAGAGAAAACAAG 286
| || |||||||| ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1112 ATGTAAAAAGCCACTTGCAGAAGTATAGACTAGCCAAGTATATGCCAGAGAAAAAAGAAG 1171
Query 287 AGAAGAAAAA-TGGTAACTCGGAAGAGAAGAAACCAGCTTCGAATACCAATGAAGCAGAT 345
|||| || | || |||||| ||||| ||||||| |||| || || | |||||| ||
Sbjct 1172 AGAA-AAGGACTGATAACTCAGAAGAAAAGAAACTGGCTTTGAGTAAGAGTGAAGCTGAC 1230
Query 346 G-GTAGAAAGAAAGGAGCCATACAGTTAACAGAAGCTCTACGTATGCAGATGGAAGTACA 404
| | |||| |||||| |||||||| ||||| ||||| || ||||||||||||||||| ||
Sbjct 1231 GAGAAGAA-GAAAGGGGCCATACAATTAACTGAAGCACTGCGTATGCAGATGGAAGTTCA 1289
Query 405 GAAGCAATTGCATGAACAGCTTGAGGTACAGA-GG-TCACTTCAATTACGGATAGA-GAA 461
||||||||||||||||||||| ||||| || | || | ||||| |||| || || ||
Sbjct 1290 GAAGCAATTGCATGAACAGCTGGAGGTGCA-ACGGGTG-CTTCAGCTACGAATTGAAGAG 1347
Query 462 CATGCTAAATACTTGGAGAAGATCTTGGAAGAAGAGCG-AAAA 503
||||||||||||||||| ||||| ||||||||| | || ||||
Sbjct 1348 CATGCTAAATACTTGGAAAAGATGTTGGAAGAACAACGCAAAA 1390
> AT1G55964.1 | Symbols: | pseudogene of myb family transcription
factor | chr1:20931032-20931975 FORWARD LENGTH=535
Length=535
Score = 207 bits (112), Expect = 7e-53
Identities = 122/127 (96%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 168 AAAGGCAACTCCTAAGGCTGTTATGAAGCCAATGAATGTTGAGAGTTTGACCATCTATCA 227
|||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 264 AAAGACAACTCCTAAGGCTGCTATGAAGCTAATGAATGTTGAGAGTTTGACCATCTATCA 323
Query 228 AGTCAAAAGCCATTTGCAGAAGTATAGACTAGCCAAGTATATGCCAGAGAGAAAACAAGA 287
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 AGTGAAAAGCCACTTGCAGAAGTATAGACTAGCCAAGTATATGCCAGAGAGAAAACAAGA 383
Query 288 GAAGAAA 294
|||||||
Sbjct 384 GAAGAAA 390
Score = 132 bits (71), Expect = 4e-30
Identities = 105/120 (88%), Gaps = 7/120 (6%)
Strand=Plus/Plus
Query 374 CAGAAGCTCTACGTATGCAGATGGAAGTACAGAAGCAATTGCATGAACAGCTTGAGGTAC 433
||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 415 CAGAAGCTC--CGTCTGCAGATGGAAGTACAGAAGCAATTGCATGAACAGCTCGAGGTAC 472
Query 434 AGAGGTCACTTCAATTACGGATAGA-GAACATGC-TA--AA-TACTTGGAGAAGATCTTG 488
||| |||||| ||| |||||||||| |||||| || || |||||||| |||||||||
Sbjct 473 AGATGTCACTACAACTACGGATAGAAGAACATATATACTAAGTACTTGGAAAAGATCTTG 532
Score = 106 bits (57), Expect = 3e-22
Identities = 68/73 (93%), Gaps = 2/73 (3%)
Strand=Plus/Plus
Query 8 TGGAGTTGCAGTTTCTGTCTGATGAGTTTGAGTTGGCCATCACAGACCGTGCTGAAACCC 67
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2 TGGAATTGCAGTTTCTGTCTGATGAGCTTGAGTTGGCCATCACAGACCGTGCTGAAACCC 61
Query 68 -CAAGGCTTGATG 79
|| ||| |||||
Sbjct 62 ACA-GGCGTGATG 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5