BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914738
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56010.2 | Symbols: NAC1, ANAC022 | NAC domain containing pr... 1452 0.0
> AT1G56010.2 | Symbols: NAC1, ANAC022 | NAC domain containing
protein 1 | chr1:20946571-20949281 REVERSE LENGTH=1393
Length=1393
Score = 1452 bits (786), Expect = 0.0
Identities = 916/976 (94%), Gaps = 20/976 (2%)
Strand=Plus/Plus
Query 1 ATGGAGACGGAAGAAGAGATGAAGGAAAATAGTATAAGCATGGTGGAGGCAAAGTTGCCA 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 138 ATGGAGACGGAAGAAGAGATGAAGGAAAGTAGTATAAGCATGGTGGAGGCAAAGTTGCCT 197
Query 61 CCGGGATTCAGATTTCACCCGAAGGACGACGAGCTTGTGTGCGATTACTTGATGAAACGA 120
||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 198 CCGGGATTCAGATTTCACCCGAAGGACGATGAGCTTGTCTGCGATTACTTGATGAGACGA 257
Query 121 TCGCTTCACAATAATCCTCGACCACCTCTCGTCTTGATCCAAGTCGACCTCAACAAGTGT 180
|||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct 258 TCGCTTCACAATAATCATCGACCACCTCTTGTCCTGATCCAAGTCGATCTCAACAAGTGT 317
Query 181 GAGCCTTGGGACATCCCAAAAATGGCATGCGTGGGAGGGAAGGATTGGTATTTCTATAGC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 318 GAGCCTTGGGACATCCCAAAAATGGCATGCGTGGGAGGGAAGGATTGGTATTTCTACAGC 377
Query 241 CAAAGAGACCGGAAATACGCGACGGGGCTGAGAACAAACCGAGCAACGGCCACTGGATAT 300
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 378 CAAAGAGACCGAAAATACGCGACGGGGCTGAGAACTAACCGAGCAACGGCCACCGGATAT 437
Query 301 TGGAAAGCTACCGGCAAAGACAGAGCCATTCTGAGAAAGGGTAAGCTTGTTGGGATGAGG 360
|||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 438 TGGAAAGCCACCGGCAAAGACAGAACCATTCTAAGAAAGGGTAAGCTAGTTGGGATGAGG 497
Query 361 AAGACATTGGTGTTCTATCAAGGTCGAGCTCCTCGAGGTCGTAAAACCGATTGGGTCATG 420
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 498 AAGACATTGGTTTTCTATCAAGGTCGAGCTCCTCGAGGCCGTAAAACCGATTGGGTCATG 557
Query 421 CACGAATTCCGTCTCCAAGGATCTTATCATCCT-CC---CA-------A----T-C--AG 462
|||||||||||||||||||||||| |||||||| || || | | | ||
Sbjct 558 CACGAATTCCGTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAG 617
Query 463 GAAGACTGGGTCTTGTGTAGGGTGTTCCATAAGAATACAGAAGGAGTTATATGTAGAGAC 522
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 618 GAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATATGTAGAGAC 677
Query 523 AACATGGGAAGCTGTTTCGATGAGACAGCCTCCGCATCTCTTCCTCCATTGATGGATCCT 582
||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 678 AACATGGGAAGCTGTTTTGATGAGACAGCCTCTGCATCGCTTCCTCCACTGATGGATCCT 737
Query 583 TACATCAACTTTGACCAAGAACCCTCTTCTTACCTCAGTGATGATCATCACTTCATCATC 642
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 738 TACATCAACTTTGACCAAGAACCCTCTTCTTATCTCAGTGATGATCATCACTACATCATC 797
Query 643 AATGAGCACGTACCCTGCTTCTCCAATTTGTCACAGAACCAAACCTTAAACTCAAACCTA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 798 AATGAGCACGTACCCTGCTTCTCCAATTTGTCACAGAACCAAACCTTAAACTCGAACCTA 857
Query 703 ACCAACTCAGTCTCTGAACTCAAGATTCCATGCAAGAACCCTAACCCTTTGTTTACTGGT 762
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 858 ACCAACTCAGTCTCTGAACTCAAGATTCCATGCAAGAACCCTAACCCCTTGTTTACTGGT 917
Query 763 GGTTCAGC-TCCAGCTACGCTCACAGGCCTCGACTCGTTCTGTTCTTCAGATCAGATGGT 821
|||||||| || ||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 918 GGTTCAGCCTC-AGCCACGCTCACAGGCCTCGACTCATTCTGTTCTTCAGATCAGATGGT 976
Query 822 TCTCAGAGCTCTACTCAGTCAGCTCACTAAGATCGATGGAAGCCTCGGGGCTAACGAATC 881
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 977 TCTCAGAGCTCTACTCAGTCAGCTCACTAAGATTGATGGAAGCCTCGGGCCTAAAGAATC 1036
Query 882 ACAGAGTTATGGAGAAGGTAGCTCGGAGAGCCTGTTGACCGACATTGGTATTCCAAGCAG 941
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1037 ACAGAGTTATGGAGAAGGTAGCTCGGAGAGCCTCCTGACCGACATCGGTATTCCAAGCAC 1096
Query 942 TGCTTGGAATTGCTGA 957
|| |||||||||||||
Sbjct 1097 TGTTTGGAATTGCTGA 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5