BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914740
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56030.1 | Symbols: | RING/U-box superfamily protein | chr1... 556 1e-157
AT1G56040.1 | Symbols: | HEAT/U-box domain-containing protein ... 424 1e-117
> AT1G56030.1 | Symbols: | RING/U-box superfamily protein | chr1:20957098-20958550
REVERSE LENGTH=1116
Length=1116
Score = 556 bits (301), Expect = 1e-157
Identities = 398/443 (90%), Gaps = 14/443 (3%)
Strand=Plus/Plus
Query 90 GAGACAGTTTTTGCGTAAATGCCAAATAGAGCTTGAAAACTTCTCCATCGAAACAGATCT 149
|||||||||||||||||| || ||||| |||||||||||||| ||| || ||||||| ||
Sbjct 96 GAGACAGTTTTTGCGTAATTGTCAAATGGAGCTTGAAAACTTGTCCCTCAAAACAGAGCT 155
Query 150 TCCACTTGTTTATGTTGATGAATCAAATTATTGGAGATTCATCAAAACTGTTAGGGTTTT 209
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 156 ACCACTTGTTTATGTTGATGAATCAAAATATTGGAGATTCATCAAAACTGTTAGGGTTTT 215
Query 210 GGCTGACGTTTTCAAGAATATGAAGA-TCACTGGAACAACACGGAAAAGTATAATTCAGG 268
|||||| ||||| || |||||||||| | ||| ||||||||||||||||||| |||||||
Sbjct 216 GGCTGAGGTTTTTAACAATATGAAGACT-ACTCGAACAACACGGAAAAGTATCATTCAGG 274
Query 269 TGCTGATGAATCCCATCTTGCCACCTGAGAGGAGCACTGATGCAATGAAATTATTTCTGT 328
|||| |||||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||||
Sbjct 275 TGCTTATGAATCCCATCTTACCATCTGAGAGAAGCACCGATGCAATGAATTTATTTCTGT 334
Query 329 CCACCATTGGAAAACTAGCTGACTTACAGTTTTCTGATGAAAATTTCAATCAGCtttttt 388
||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 335 CCACCATTGAAAAACTAGCTGACTTGCAGTTTTCTGATGAAGATTTCAATCAGCTTTTTG 394
Query 389 tAAGTTCTCGGCTTAATTTACAGGCTACTATAGAGTTGGAGAATAAGTACAATGACGAAG 448
|||||||||||||| |||||||| | | | | ||||||||||||||||| |||
Sbjct 395 TAAGTTCTCGGCTTGATTTACAG--T--T---G-G----AGAATAAGTACAATGACAAAG 442
Query 449 TCGAAGTCAATCTTAGGAAGGAAGCAGAAGATGCACTTGCTAGAAAGTTTAAGGAAGTAG 508
||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 443 TCGAAGTGAAGCTTAGGAAAGAAGCAGAAGATGCACTTGCTAGAAAAATTAAGGAAGTAG 502
Query 509 TAGATTTGACGGAACGGTTACTT 531
|||||||||||||||||||||||
Sbjct 503 TAGATTTGACGGAACGGTTACTT 525
Score = 209 bits (113), Expect = 4e-53
Identities = 156/176 (89%), Gaps = 5/176 (3%)
Strand=Plus/Plus
Query 1038 ACAGGAGGTCATGCAAGATCCACACATGGCTGCTGATGGATTCACATACGAATTAGAAGC 1097
||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 ACA-GATGTCATGAAAAATCCACACATGGCTGCTGATGGATTCACATACGAATTAGAAGC 995
Query 1098 TATT-AAGAATTGGATTAACACAGGTCACCAG-ACCTCACCGATGACAAATCTCCCGCTT 1155
|||| || ||| ||||||||||||||||| || || || |||||||| |||||| |||
Sbjct 996 TATTCAAAAAT-GGATTAACACAGGTCAC-AGGACGTCGCCGATGACTAATCTCAAACTT 1053
Query 1156 CCACATCTCAACTTTGTCCCTAACCGAGCTCTCCGCTCTGCCATTGAGGAGTTGGG 1211
||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1054 TCACATTTCAGCTTTTTCCCTAACCGAGCTCTCCGCTCTGCAATTGAGGAGTTGGG 1109
> AT1G56040.1 | Symbols: | HEAT/U-box domain-containing protein
| chr1:20960356-20962334 REVERSE LENGTH=1458
Length=1458
Score = 424 bits (229), Expect = 1e-117
Identities = 463/573 (81%), Gaps = 28/573 (5%)
Strand=Plus/Plus
Query 657 GCGTTGGAAGGCTGAGGAGTTCGAGAGCGAA-TACAAGAATGAAG-TGGTACTCAGGAGA 714
||||| ||||||||||||||| || || || ||| || || || || | |||||||||
Sbjct 900 GCGTTTGAAGGCTGAGGAGTTTGAAAG-AAAGTACGAGGGTG-AGATGATTCTCAGGAGA 957
Query 715 GAATCAGAAACTGCGCTGGATAAAGAAAGGAAAGAGTTGG-AGGGGATAAAAG--AACTG 771
|||||||| | ||||||||| ||||||| ||||||||||| || | | |||| || |
Sbjct 958 GAATCAGAGATTGCGCTGGAGAAAGAAAAGAAAGAGTTGGAAGAAG-T-AAAGCTAA-AG 1014
Query 772 CTTGAAACTTGTGTCACAGAACAAGAGAACCTGAATTC-GCTGGTGATAACATGGCAAGA 830
|||||||| | | | ||| |||||||| ||| || | ||| | ||| ||||| ||
Sbjct 1015 CTTGAAACCTACGAAAGAGAGCAAGAGAATCTGTCCTCAG-AGGTCAGAACTTGGCAGGA 1073
Query 831 CAAGTACGACCAAGAGTCAATTATTAGAAAAGAAAAAGAGGATGCTCTTTCTACTa-aa- 888
||||||||| |||||||| | | || | ||| || ||| |||| ||||||| | ||
Sbjct 1074 CAAGTACGAGCAAGAGTCGAGTCTTCGGAAACTAAGTGAGTATGCACTTTCTA-GAGAAC 1132
Query 889 aaaaCAGAGC-TCGAGACT-GTCAAAGGACTAG-TCGAATCGTACAAACAAGAAGCAGAT 945
|| | ||||| || ||| | ||||||||||| | | |||| ||||| ||||||||||
Sbjct 1133 AAGA-AGAGCTTC-AGA-TAGTCAAAGGACT-GCTAGAATTTTACAATGGAGAAGCAGAT 1188
Query 946 GCGATGCGACAAGAGAGGGACAATGCTCTCAAAACAGCACAAGAG-ATAGTGGACGAGCA 1004
|||||||| ||||||||||||| ||||||||||||||| ||||| | | |||| |||
Sbjct 1189 GCGATGCGGGAAGAGAGGGACAAAGCTCTCAAAACAGCAAAAGAGCA-AATGGAAAAGCG 1247
Query 1005 ACAACCTCCACCTTCATTTTTCTGCCCTATCACACAGGAGGTCATGCAAGATCCACACAT 1064
|||||||| | || |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1248 TCAACCTCCGTCATCGTTTTTCTGCCCTATCACACAGGAGGTCATGAAAGATCCACACTT 1307
Query 1065 GGCTGCTGATGGATTCACATACGAATTAGAAGCTATTAAGAATTGGATTAACACAGGTCA 1124
||||| |||||||||||||||||| |||| |||||| ||| ||| ||| |||||||||
Sbjct 1308 TGCTGCCGATGGATTCACATACGAAGCAGAATCTATTAGGAAATGGCTTAGCACAGGTCA 1367
Query 1125 CCAGACCTCACCGATGACAAATCTCCCG-CTTCCACATCTCAACT-TTGTCCCTAACCGA 1182
|||||| || |||||||||||||||| | ||| ||||||||| || |||||||||||||
Sbjct 1368 CCAGACGTCGCCGATGACAAATCTCC-GACTTTCACATCTCA-CTCTTGTCCCTAACCGT 1425
Query 1183 GCTCTCCGCTCTGCCATTGAGGAGTTGGGTTGA 1215
|||||||||||||| ||||||||||||| ||||
Sbjct 1426 GCTCTCCGCTCTGCGATTGAGGAGTTGGTTTGA 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5