BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914824
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54620.1 | Symbols: | Plant invertase/pectin methylesterase... 756 0.0
> AT1G54620.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:20400437-20401025 REVERSE
LENGTH=589
Length=589
Score = 756 bits (409), Expect = 0.0
Identities = 527/582 (91%), Gaps = 15/582 (3%)
Strand=Plus/Plus
Query 1 ATGTTTTGCTACGTAATAAGaaaaaaaaaaaCAATGAAGTTCTTGATTTACCTTGTTGTG 60
|||||||||| | | |||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 11 ATGTTTTGCTTC--CA-AAGAAAAAAAGAAACAATGAAGTTCTTGATTTACCTCGTTGTG 67
Query 61 TTTGTTCTTCTTTTCAATGGTTTGACGGCCAACAGAGTGGAAAATTCTCTGGTTCAGAAA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 68 TTTGTTCTTCTTTTCAATGGTTTGACGGCCAACAGAGTGGAAAACTCTCTGGTTCAGAAA 127
Query 121 TATTGCAATCAAAGTTCACAGTACG-GAGAACGACATTTCTATAAGTTTTGCATTGCGTC 179
|||||||||||||||||| |||||| | |||||| |||||||||||||||||||||| ||
Sbjct 128 TATTGCAATCAAAGTTCAAAGTACGCG-GAACGATATTTCTATAAGTTTTGCATTGCATC 186
Query 180 TCTCGAAGAGAATGTGGAAAGTC-GAAAAGCAAGAAAT-GTCGATGATTTAACATTGATA 237
|||||||||||||| |||||||| |||| ||||| ||| | | |||||||||||||| ||
Sbjct 187 TCTCGAAGAGAATGCGGAAAGTCAGAAA-GCAAGGAATAG-CAATGATTTAACATTGGTA 244
Query 238 GGAACGAATAATGCTTTATCAAACCTAACAAATGTGAAAAGAATTGTGGAGAAGATTCTA 297
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 245 GGAACGAATAACGCTTTATCAAACCTAACAAACGTGAAAAGAATTGTGGAGAAGATTTTC 304
Query 298 AACGAGAGGAAATATAAGAGCAAGCTGAGTAAGAAGTTGTTGCAAAATTGCCTTAAGCTT 357
|||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 305 AACGAGAGAAAATATAAGGGCAGGCTGAGTAAGAAGTTGTTGCAAAAGTGCCTTAAGCTT 364
Query 358 TACTCTGAAGGCTATGAGGCGTTAACCTCAGCTTTGAAGTACATCAAAATGC-ACGATTT 416
|| |||||||||||||| |||||||||||||||||||||||||| ||| || | ||| |
Sbjct 365 TATTCTGAAGGCTATGACGCGTTAACCTCAGCTTTGAAGTACATTAAAGTGAGA-GATCT 423
Query 417 GTTAAAACTTTCGTTTCGTTTGAAGAAAGCAAAAGAAGCAGCAAGCATTTGCGAAATGGG 476
||| ||| ||||| ||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 424 GTTTAAAGTTTCGGTTCATTTGCAGAAAGCAAAAGAAGCACCAAGCATTTGCGAAATGGG 483
Query 477 ATTCAACGGCGACAATCAACAAATATCTCC-AGTGATGAAAGAAAACGAAGTTCTCTTCG 535
|||||||||||||||| ||||||||||||| | ||| |||||||||||| ||||| ||||
Sbjct 484 ATTCAACGGCGACAATAAACAAATATCTCCGA-TGAAGAAAGAAAACGATGTTCTTTTCG 542
Query 536 ACGTGATCAACATTCCTTACATGTTT-AATTTTAATAGACAT 576
|||||||||| |||||||||| |||| ||| | ||| |||||
Sbjct 543 ACGTGATCAATATTCCTTACA-GTTTTAATATGAATCGACAT 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5