BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914827
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54650.2 | Symbols: | Methyltransferase family protein | ch... 737 0.0
> AT1G54650.2 | Symbols: | Methyltransferase family protein |
chr1:20405598-20407753 REVERSE LENGTH=1188
Length=1188
Score = 737 bits (399), Expect = 0.0
Identities = 468/501 (93%), Gaps = 5/501 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAGAGACGAAGCAGGAGAGTATCATTCCAAAGATTTCGAATGGGAATTTCTC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 ATGGAGAAAAGAGAAGAAGCAGGAGAGTATCATTCCAAAGATTTCGAATGGGAATTTCTC 127
Query 61 CAGAACATCGTCGAGAACGATCCTTCTCTCTCCCACCATCTCCACCACCACCA--AGATT 118
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 128 AAGAACATCGTCGAGAACGATCCTTCTCTCTCCCACCATCTCCACCACCACCACCAAAAT 187
Query 119 -TCTCCAACTATTCACCAAATTCGCAGCCATGGCAAGATTTTCACTCCCGTCACTCCTCC 177
||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CTCTCCAAATATTTACCAGATTCGCAGCCATGGCAAGATTTTCACTCCCGTCACTCCTCC 247
Query 178 GGCAAATTCTTCAAGGAAAGAAGGTATTTGTTGAAGGAATTCCCCGAGTTAGTTTCTTGT 237
|| |||||||||||||||||||||||| ||||||||||||| || || ||||||||||||
Sbjct 248 GGAAAATTCTTCAAGGAAAGAAGGTATCTGTTGAAGGAATTTCCTGAATTAGTTTCTTGT 307
Query 238 GGAGAGAACTCAAAACTTTTGGAAATTGGTTGCGGTAATGGCAGTACTGTGCTTCCGATT 297
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 308 GGAGAGAACTCAAAACTTTTGGAAATTGGTTGTGGTAATGGCAGTACCGTGCTTCCGATT 367
Query 298 TTACGTGGAAGCAAGAACATTACTGTATATGCTTGTGATTGTAGCAGTGAGGCCCTTGTT 357
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 368 TTACGTGGAAGCAAGAACATTACTGTGTATGCTTGTGATTGTAGCAGTGACGCTCTTGTT 427
Query 358 AGGACTAAAGAGAACATTGATCGCGCTATTGATTTAGTTGATAACTTCCATTCTTTCTGC 417
|||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||
Sbjct 428 AGGACTAAAGAGAACATTGATCGCGCTATTTCTTCGGTTGATAACTTTCATTCTTTTTGT 487
Query 418 TGTGACTTTTCGACGTCTGAGTTTCCTA-ATTGGGTCGCATGTGATCGTTGTCGAGACAA 476
|||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 488 TGTGACTTTTCGACTTCTGAGTTTCC-AGATTGGGTGGCATGTGATCGTTGTCGAGACAA 546
Query 477 GTTTATGGTTAACCATTCAGG 497
||||||| ||||||| |||||
Sbjct 547 GTTTATGCTTAACCACTCAGG 567
Score = 636 bits (344), Expect = 0.0
Identities = 372/386 (96%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 542 AACATTGCATCGGCGGGGTGGATTTTGTCACTCTGATATTTACATTGTCGGCAGTGCCTA 601
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 AACATTGCATCGGTGGGGTGGATTTTGTCACTCTGATATTTACATTGTCGGCAGTGCCTA 647
Query 602 AAGAAAGGATGCCGAGAGCTATCAAGGAATGTTTTTCTGTGCTGAAAGCGGGTGGTCTGC 661
||||||| ||||||||||||||||||||||| ||| ||||||||||| | ||||||||||
Sbjct 648 AAGAAAGAATGCCGAGAGCTATCAAGGAATGCTTTGCTGTGCTGAAACCTGGTGGTCTGC 707
Query 662 TCTTGTTCAGAGATTACGGCTTATATGACATGACTATGCTACGGTTTGAGCCAGAGAAAC 721
|||| || |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TCTTATTTAGAGATTATGGATTATATGACATGACTATGCTACGGTTTGAGCCAGAGAAAC 767
Query 722 GTGTAGGATTTAGGGAATATGTGCGGTCCGATGGAACCCTTTCCTATTTCTTTTGTCTCG 781
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 768 GTGTAGGATTTAGGGAATATGTGCGGTCTGATGGAACCCTTTCCTATTTCTTTTGTCTCG 827
Query 782 ACACTGCCAGGAAACTATTTACTGATGCTGGATTCATTGAGGTTGAGCTTGAATATTGTT 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 ACACTGCCAGGAAACTATTTACTGATGCTGGATTCATTGAGGTTGAGCTTGAATATTGTT 887
Query 842 GTGTCAAAGCAGTAAACCGGAGAAAGGGTAAGGAAATGTACCGAGTTTGGGTTCATGGGA 901
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 888 GTGTCAAAGCAGTAAACCGGAGAAAGGGTAAGGACATGTACCGAGTTTGGGTTCATGGGA 947
Query 902 AGTTCCAAAAGCCCTTGTATAATTAA 927
|||||||||||||||| | |||||||
Sbjct 948 AGTTCCAAAAGCCCTTCTCTAATTAA 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5