BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914834

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G42316.1 | Symbols:  | transposable element gene | chr3:1446...   172    1e-42
  AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting c...   172    1e-42


> AT3G42316.1 | Symbols:  | transposable element gene | chr3:14469182-14470707 
REVERSE LENGTH=1526
Length=1526

 Score =  172 bits (93),  Expect = 1e-42
 Identities = 128/144 (89%), Gaps = 5/144 (3%)
 Strand=Plus/Plus

Query  1     ATGACTCAGAAAAAAG-ATCAACAATGGAGTGCAGCAATTGTGATAAAACCAAGAGGGAA  59
             |||||||  ||||| | ||||||||||||   || ||||| |||||||| ||||||||||
Sbjct  1264  ATGACTC-CAAAAAGGAATCAACAATGGA---CATCAATTATGATAAAAGCAAGAGGGAA  1319

Query  60    ATTATTACTCAATTCAGATTCAGATTTTACTGCAATGCAACATGAAAGTGATGATCCAAT  119
             | ||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  1320  AGTATTACTCAGTTCAAATTCATATTTTACTACAATGCAACATGAAAGTGATGATCCAAT  1379

Query  120   TGTTCCTGTTGATTCTTTGCAAGT  143
             ||||| ||||||||||||||||||
Sbjct  1380  TGTTCTTGTTGATTCTTTGCAAGT  1403


> AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting 
complex gene 3 | chr1:22700010-22701383 FORWARD LENGTH=1198
Length=1198

 Score =  172 bits (93),  Expect = 1e-42
 Identities = 103/108 (95%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  146  GCTTACCTGGTGACTATGGATTTGACCCACTTGGTCTTTCAGACCCAGAAGGTACTGGAG  205
            |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct  348  GCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAG  407

Query  206  GGTTCATTGAGCCGAGATGGCTAGCATACGGAGAGATCTTCAACGGAC  253
            | ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct  408  GATTCATTGAGCCAAGATGGCTAGCATACGGAGAGATCATCAACGGAC  455


 Score = 82.4 bits (44),  Expect = 2e-15
 Identities = 48/50 (96%), Gaps = 0/50 (0%)
 Strand=Plus/Plus

Query  254  TGGCGGATCCCATCAACAACAACGTCTTGACCAGCCTCAAGTTCCACTGA  303
            |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  915  TGGCTGATCCCGTCAACAACAACGTCTTGACCAGCCTCAAGTTCCACTGA  964



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14024701971


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5