BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914837

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54770.1 | Symbols:  | Fcf2 pre-rRNA processing protein | ch...   285    1e-76


> AT1G54770.1 | Symbols:  | Fcf2 pre-rRNA processing protein | 
chr1:20434639-20436008 FORWARD LENGTH=927
Length=927

 Score =  285 bits (154),  Expect = 1e-76
 Identities = 178/190 (94%), Gaps = 0/190 (0%)
 Strand=Plus/Plus

Query  18   GTTCTATGGGAGATTGACAAAGAAGAATAGAAAAGCAACTCTTGCCGATGAGTTGGTGTC  77
            ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  545  GTTTTATGGGAGATTGACAAAGAAGAATAGAAAAGCAACTCTTGCTGATGAGTTGGTTTC  604

Query  78   AGATCCTAAAACTTCTCAGTACAGGAAGCGTAAAGTTAGGGAGATTGAGGAGAAGAGTAG  137
            ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||
Sbjct  605  AGATCCTAAAACTGCTCTCTACAGGAAGCGTAAAGTTAGGGAGATTGAGGAGAAGAGTAG  664

Query  138  AGCTGTCACGAATAAGAAATGGAAGAAAAAGGGAAACCAATCCAAGAACACAAAGCAAAC  197
            |||||| ||||||||||||||||| |||||||||||||| || ||||||||||||| || 
Sbjct  665  AGCTGTTACGAATAAGAAATGGAATAAAAAGGGAAACCAGTCTAAGAACACAAAGCCAAG  724

Query  198  AAGGAACTGA  207
            ||||||||||
Sbjct  725  AAGGAACTGA  734



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9255448584


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5