BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914843
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54820.1 | Symbols: | Protein kinase superfamily protein | ... 1960 0.0
> AT1G54820.1 | Symbols: | Protein kinase superfamily protein
| chr1:20447316-20450861 FORWARD LENGTH=1531
Length=1531
Score = 1960 bits (1061), Expect = 0.0
Identities = 1251/1342 (93%), Gaps = 16/1342 (1%)
Strand=Plus/Plus
Query 44 ACCATCATCCATCATCCCAGAGTATCCACGAGCGGAACTC-GCATGGCCTAATTTCGATA 102
||||||||| |||||||| | | | |||||||| ||| | || ||||||||||||||||
Sbjct 104 ACCATCATCTATCATCCC-G-G-AGCCACGAGCAAAAC-CAGCGTGGCCTAATTTCGATA 159
Query 103 AATGCCATGATCATCATCGGAATCTCCATCATCTCCATCTTCATAATCTTTGCAATTCTC 162
|||||||| |||||||| || |||||||| |||||||| ||||||||| |||||||||||
Sbjct 160 AATGCCATAATCATCATTGGCATCTCCATTATCTCCATATTCATAATCCTTGCAATTCTC 219
Query 163 TTAATAATCCTTTTACTTCATCGACTTAAATCCGCAAGAGAAAAAGCACAAGAATTATCT 222
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 220 CTAATAATCATTTTACTTCATCGACTTAAATCCGCAAGAGTCAAAGCACAAGAATTATCT 279
Query 223 TCCAAAGAAAGCTTCAACAACATGAACAATGGTGGAACTTCGACTAACTACAGCTACACT 282
| |||||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 280 TGCAAAGAAAGCTTCAACAACATGAACAATGGTGGAGCTTCCACCAACTACAGCTACACT 339
Query 283 TCTAGCCCTGATGACATCAAGAGAGATTGTCTATACTCAAGAAACCCAACATCGTTCAGA 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TCTAGCCCTGATGACATCAAGAGAGATTGTCTATACTCAAGAAACCCAACATCGTTCAGA 399
Query 343 CAACTGCCTCAACAAACAAAAAGTTGTAGAAGAAGCCGAGCAGAAGGAGTAGAAGTGTAC 402
||| | || | ||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 400 CAATTACCCCCACAGACAAAAAGTTGTAGGAGAAGCCGAGCCGAAGGAGTAGAAGTGTAC 459
Query 403 ACATACAAGGAATTAGAGATTGCAACTAATAATTTCAGCGAGGCCAAGAAAATCGGAAGC 462
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 460 ACATACAAGGAATTAGAGATTGCAACAAATAATTTCAGCGAGGAGAAGAAAATCGG-A-- 516
Query 463 GGTGGATATGGAGATGTGTACAAAGGAGTACTAAGGGATGGAACTGTTGCGGCCATTAAA 522
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 517 -----A-ATGGAGATGTGTACAAAGGAGTACTAAGTGATGGAACTGTTGCGGCCATTAAA 570
Query 523 AAGCTTCATATGCTTAATGATAATGCTAGTAACCAAAAGCATGAAGAACGGTCCTTTAGG 582
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AAGCTTCATATGTTTAATGATAATGCTAGTAACCAAAAGCATGAAGAACGGTCCTTTAGG 630
Query 583 CTTGAGGTTGATCTTCTTAGTCGATTACAATGCCCATATTTGGTGGAATTACTTGGATAT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CTTGAGGTTGATCTTCTTAGTCGATTACAATGCCCATATTTGGTGGAATTACTTGGATAT 690
Query 643 TGTGCAGATCAAACCCATAGGATTCTGATATTTGAATATATGCCTAATGGTACACTGGAA 702
||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| |||||
Sbjct 691 TGTGCAGATCAAAACCATAGGATCCTGATATATGAATTTATGCCTAATGGTACTGTGGAA 750
Query 703 CATCATCTTCATGATCATAGTTGTAAGAATCTAAAGGATCAATTTCAACCATTAGATTGG 762
|||||||| || ||||||| || ||||||||||||||||| | ||||||||||||||||
Sbjct 751 CATCATCTCCACGATCATAATTTTAAGAATCTAAAGGATCGACCTCAACCATTAGATTGG 810
Query 763 GGAACCCGGCTTAGGATTGCCCTTGATTGCGCCCGAGCTCTAGAGTTT-TTACACGAGAA 821
||| | ||||||||||| ||||||||||||||| |||| ||||||||| || || |||||
Sbjct 811 GGAGCTCGGCTTAGGATCGCCCTTGATTGCGCCAGAGCCCTAGAGTTTCTT-CATGAGAA 869
Query 822 TACAGTCTCTACTGTGATCCATCGTAACTTCAAGTGTACCAACATTTTGTTGGATCAAAA 881
|||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 870 TACAATCTCTACTGTTATCCACCGGAACTTCAAGTGTACCAACATTTTGTTGGATCAAAA 929
Query 882 TAATCGAGCTAAAGTTTCAGATTTCGGATTGGCGAAAACTGGATCCGATAAACTAAACGG 941
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 930 TAATCGAGCTAAAGTTTCAGATTTCGGATTAGCCAAAACCGGATCCGATAAACTAAACGG 989
Query 942 GGAGATTTCAACAAGGGTGCTCGGTACCACAGGATATCTTGCTCCAGAGTATGCCTCTAC 1001
||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 990 TGAGATTTCAACAAGGGTTATTGGCACCACAGGATATCTTGCTCCAGAGTATGCCTCTAC 1049
Query 1002 GGGAAAGCTTACCACAAAATCCGATGTTTATAGTTATGGTATTGTGTTACTACAACTCTT 1061
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TGGAAAGCTTACTACAAAATCAGATGTTTATAGTTATGGTATTGTGTTACTACAACTCTT 1109
Query 1062 AACGGGCCGTACACCGATCGATTCAAGGCGTCCGCGGGGACAAGATGTCCTTGTCTCTTG 1121
|||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1110 AACGGGTCGCACACCGATCGATTCAAGACGTCCACGGGGACAAGATGTCCTTGTCTCTTG 1169
Query 1122 GGCTCTTCCAAGGCTAACGAACAGAGAGAAAATTAGTGAAATGGTGGATCCAACCATGAA 1181
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1170 GGCTCTTCCAAGACTAACCAATAGAGAGAAAATTAGTGAAATGGTGGATCCAACCATGAA 1229
Query 1182 AGGTCAATACTCACAAAAAGATCTTATTCAGGTAGCAGCCATAGCAGCAGTGTGTGTGCA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 AGGTCAATACTCACAAAAAGATCTTATTCAGGTAGCAGCCATAGCAGCAGTGTGTGTGCA 1289
Query 1242 ACCAGAAGCAAGTTACAGACCGTTGATGACGGATGTTGTTCACTCGCTCATTCCCCTTGT 1301
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 ACCAGAAGCAAGTTATAGACCGTTGATGACGGATGTTGTTCACTCGCTCATTCCCCTTGT 1349
Query 1302 TAAAGCTTTCAACAAAAGTACTGAATCTTCTCGGTTTCCTAGCCGTAGAGAAAGCTTATC 1361
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1350 TAAAGCTTTCAACAAAAGTACTGATTCTTCTCGGTTTCCTAGCCGTAGAGAAAGCTTGTC 1409
Query 1362 ATTTGATGATATTATGCCATGA 1383
||||||||||||||||||||||
Sbjct 1410 ATTTGATGATATTATGCCATGA 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5