BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914847
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54860.1 | Symbols: | Glycoprotein membrane precursor GPI-a... 898 0.0
> AT1G54860.1 | Symbols: | Glycoprotein membrane precursor GPI-anchored
| chr1:20457421-20458631 REVERSE LENGTH=901
Length=901
Score = 898 bits (486), Expect = 0.0
Identities = 565/604 (94%), Gaps = 2/604 (0%)
Strand=Plus/Plus
Query 1 ATGGTCTTGATTACGAAGATGTCTCTCTCTTTCTACATCATTCATCTTCTCATTTTCTCC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 ATGGTCTTGATTACTAAGATGTCTCTCTCTTTCTACATCATTCATCTTCTCATTTTCTCC 257
Query 61 TTGATTCCCACTTGTGTTATCTGCAACCAGGCGGAGGATAATCTTCTTCAAGGTCTAAAC 120
|||||| ||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 258 TTGATTTCCACTTGTGTTGTCTCCAACCAGGCCGAGGATAATCTTCTTCAAGGCCTAAAC 317
Query 121 AGCTACCGAACTGCTCAAAGAGTTCCTCCTTTTGCAAAGAACGAAAAGGCTGATTGTGTG 180
||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 318 AGCTACCGAACTGCTCAAAGAGTTCCTCCATTTGCCAAGAATGAGAAGGCTGATTGTGTG 377
Query 181 GCGGATGAGATCGCCGACAAGTTGGAAGATCAGCCATGCACAAACCATACCACAGCCAGC 240
|| |||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||
Sbjct 378 GCTGATGAGATCGCCGACAAGCTCGAAGATCAGCCATGCACAAACCACACCACAGCGAGC 437
Query 241 ACGGTTACTCCTGGCTCGGTCCCTCCACGGTTAACAAACTACCAAGACATTCTCTCTGAG 300
|||||||||||||||||||| ||||||||| | || |||||||| ||||||||||||||
Sbjct 438 ACGGTTACTCCTGGCTCGGTACCTCCACGGCTGACGAACTACCAGGACATTCTCTCTGAA 497
Query 301 TGCAAAATTGATCCAAACACTACCCGTGATGCG-TTGATCTTACCGGTCTGTATCCCTAA 359
|||||||| || ||||||||||||||||| | | ||||||||||| ||||||||||||||
Sbjct 498 TGCAAAATCGACCCAAACACTACCCGTGACG-GATTGATCTTACCTGTCTGTATCCCTAA 556
Query 360 CCGGATCCCTACTTTGGCTTTAACTAATTACACCCAAACTGGTTATGCTCGGTATCTAAA 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 557 CCGGATCCCGACTTTGGCTTTAACTAATTACACCCAAACTGGTTATGCTCGGTATCTTAA 616
Query 420 TGATTCGAGGTATGTCGGGGCCGGTGTTGGATCGGAGAAAGAATGGATGGTGGTTGTGTT 479
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 617 TGATTCGAGGTATGTCGGGGCTGGTGTTGGGTCGGAGAAAGAGTGGATGGTGGTTGTATT 676
Query 480 GACAACAAGCACTCCAGGTGGAAGCTTTACTGCTGGTGTTGCTGCTGGTGAGGCGACGTC 539
||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 677 GACGACAAGTACTCCAGGTGGAAGCTTTACAGCTGGTGTTGCTGCTGGCAAGGCGACGTC 736
Query 540 TGTGAGAGTGATGGCTGGTTTAGGGCTAATGGGGTTGTTGTTTAGTTGCCTTGTGCTCTT 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TGTGAGAGTAATGGCTGGTTTAGGGCTAATGGGGTTGTTGTTTAGTTGCCTTGTGCTCTT 796
Query 600 CTGA 603
||||
Sbjct 797 CTGA 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29035336966
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5