BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914873
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54980.1 | Symbols: | Plant invertase/pectin methylesterase... 658 0.0
AT5G50070.1 | Symbols: | Plant invertase/pectin methylesterase... 289 2e-77
> AT1G54980.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:20507375-20508355 REVERSE
LENGTH=543
Length=543
Score = 658 bits (356), Expect = 0.0
Identities = 479/539 (89%), Gaps = 5/539 (1%)
Strand=Plus/Plus
Query 23 AAAAA-TTTCTGTCAATCGCTTTGCAAGTGGCTTTTTTGTTACAATTTCTCGTAGTCTCA 81
||||| ||||| | ||| |||| |||||||| ||||||||||||||||| |||| ||
Sbjct 7 AAAAAGATTCTGCCGATCACTTTACAAGTGGCAGTTTTGTTACAATTTCTCATAGTGTC- 65
Query 82 T-CTTCGACCTTGAACTCCACAAAATACATCGATAAATTATGCGAGATGCCATCCATCGA 140
| ||||| |||||| ||||||||||||||| ||||||||||| ||||||| |||| | ||
Sbjct 66 TGCTTCGGCCTTGACCTCCACAAAATACATAGATAAATTATGTGAGATGCAATCCGTTGA 125
Query 141 CGACAAAGCCTTTTGTTTGCAAACGTTGAGCG-CATATCCTCTTGCCGCTTCTGCCACTG 199
|||||| |||||||||||||||||||||||| || |||||||||| ||||| |||||||
Sbjct 126 AGACAAAACCTTTTGTTTGCAAACGTTGAGCGCCA-ATCCTCTTGCGGCTTCCGCCACTG 184
Query 200 GCTTGCTCCCACTTGCGGAAGTCGTGATCCGCGGCATTGACATACCCTATGCCAAGTTGT 259
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 185 GCTTGCTCCCACTTGCGGAAGTCGTGATCAGGGGCATTGACTTACCCTATGCCAAGTTGT 244
Query 260 TGGTGAAATCTGCAGACAGAGCAGCAGAAAAGGTACCGGCTCTGAAGGAACAGTTCAAGG 319
|||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 245 TGGTGAAATCTGCAGATAGAGCAATAGAAAAGATACCGGCTCTGAAGGAACAGTTCAAGG 304
Query 320 CGTGCCGAGATGCCTACTTTCTTATAGTAATGTCTCTCAAGAGTGCTGCTTCAGAACTCA 379
||||| |||| ||| | ||| |||||||||||||||||||||||||||||||| ||||
Sbjct 305 AGTGCCAAGATTCCTTCCTTCGCATAGTAATGTCTCTCAAGAGTGCTGCTTCAGAGCTCA 364
Query 380 AGATATCTCCAGAAACCGCTAACTATGATGCTATGGTTTGTTTCGACCAAACAACCCTAG 439
|| |||||||||| ||||| ||||||||||||||| ||||||||||| |||||| | ||
Sbjct 365 AGGTATCTCCAGACACCGCCAACTATGATGCTATGATTTGTTTCGACGAAACAAAGCGAG 424
Query 440 TGCAGAAATTGATCGGGAAAAACAAAGACTTGACTTCGAAGAGTCTCATGGAGATGACAT 499
|| || | |||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 425 TGAAGGAGGTGATCGGGAAAAACGAAGACGTGACTTCGAAGAGTCTCATAGAGATGACAT 484
Query 500 TGCGTATGGATAAGCTCATTCGTCTCGCTATTGGAGCCACCGAAGTTGTTGGAGGATGA 558
|||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 485 TGCGTATGGAGAAGCTCATTTTTCTTGCTCTTGGAGCCACCGAAGTTGTTGGAGGATGA 543
> AT5G50070.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:20364556-20365429 FORWARD
LENGTH=552
Length=552
Score = 289 bits (156), Expect = 2e-77
Identities = 379/484 (78%), Gaps = 26/484 (5%)
Strand=Plus/Plus
Query 88 ACCTTGAA-CTCCACAAAATACATCGATAAATTATGCGAGATGCCATCCATCGACGACAA 146
||||| || ||||||||||||||| ||||||||||| ||||| ||| ||||| | ||
Sbjct 82 ACCTT-AACCTCCACAAAATACATTAATAAATTATGCCAGATGTCATTTGTCGACAATAA 140
Query 147 AGCCTTTTGTTTGCAAACGTTGAGCGCATATCCTCTTGCCGCTTCTGCCACTGGCTTGCT 206
| |||| ||||||||||| ||||| || ||||||| ||| ||||||||||||||||||||
Sbjct 141 ACCCTTCTGTTTGCAAACATTGAGTGCCTATCCTCCTGCGGCTTCTGCCACTGGCTTGCT 200
Query 207 CCCACTTGCGGAAGTCGTGATCCGCGGCATTGACATACCCTATGCCAAGTTGT-TGGTGA 265
|||||||||| || ||||||||||||||||| | ||||| | |||||| || || ||
Sbjct 201 CCCACTTGCGTCAGCCGTGATCCGCGGCATTGTCCTACCCCAAGCCAAGAAGTCTGC-GA 259
Query 266 AATCTGCAGACAGAGCAGCAGAAAA-GGTA-CCG-GCTCTGAAGGA-ACAGTTCAAGGCG 321
| |||| | ||||||| ||||| || | ||| ||| ||||| | ||||||| || ||
Sbjct 260 GTTTTGCAAATGGAGCAGC-GAAAAAGG-AGCCGAGCT-TGAAG-ACACAGTTCCAGACG 315
Query 322 TGCCGAGATGCCTACTT-TCT-TATAGTA-ATGTCTCTCAAGAGTGCTGCTTCA-GAACT 377
|||| ||| |||| || | ||| | | || ||||||| ||| ||| || | |||||
Sbjct 316 TGCCAAGAGGCCT--TTGTAAGTATTGGAGAT-TCTCTCATGAGCGCTT-TTGAAGAACT 371
Query 378 CAAGATATCTCCAGAAACCGCTAAC-TATGATGCTATGGTTTGTTTCGACCAAACAACCC 436
|||| |||| | | ||| ||| ||||||| |||| |||| |||||| |||||||
Sbjct 372 CAAGCGCGATCCACATATCGC-AACCTATGATGTTATGACTTGTACCGACCATACAACCC 430
Query 437 TAGTGCAGAAATTGATCGGGAAAAACAAAGACT-TGACTTCGAAGAGTCTCATGGAGATG 495
|||| |||| ||| |||| ||||||| ||| | || ||||||||| |||||| ||||||
Sbjct 431 AAGTGAAGAATTTGGTCGGAAAAAACACAGA-TGTGGCTTCGAAGACTCTCATAGAGATG 489
Query 496 ACATTGCGTATGGATAAGCTCATTCGTCTCGCTATTGGAGCCAC-CGAAGTTGTTGGAGG 554
||| ||| ||||| |||||||||| ||| ||| ||| | |||| | ||||| |||| ||
Sbjct 490 ACAATGCAAATGGAGAAGCTCATTCCTCTTGCTCTTGCATCCACAC-AAGTTCTTGGCGG 548
Query 555 ATGA 558
|||
Sbjct 549 GTGA 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5