BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914880

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55010.1 | Symbols: PDF1.5 | plant defensin 1.5 | chr1:20517...   377    2e-104
  AT5G44420.1 | Symbols: PDF1.2, PDF1.2A, LCR77 | plant defensin ...   135    1e-31 


> AT1G55010.1 | Symbols: PDF1.5 | plant defensin 1.5 | chr1:20517078-20517403 
FORWARD LENGTH=243
Length=243

 Score =  377 bits (204),  Expect = 2e-104
 Identities = 230/243 (95%), Gaps = 0/243 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTAAGTTTTCTTCCATCATCACCCTTATCTTCGCTGCTCTTGTTCTCTTTGCTGAT  60
            ||||||||||||| | ||| ||| |||||||| || | ||||||||||||||||||||||
Sbjct  1    ATGGCTAAGTTTTGTACCACCATTACCCTTATTTTGGTTGCTCTTGTTCTCTTTGCTGAT  60

Query  61   TTAGAAGCACCGGTAATTGTGAAAGCAGAGCTTTGCAAAAGGGAAAGTGAGACATGGTCA  120
            || |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTTGAAGCACCGACAATTGTGAAAGCAGAGCTTTGCAAAAGGGAAAGTGAGACATGGTCA  120

Query  121  GGACGTTGTGTAAACGATTATCAGTGCAGGGATCATTGCATTAACAATGATAGAGGAAAT  180
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  GGACGTTGTGTAAACGATTATCAGTGCAGAGATCATTGCATTAACAATGATAGAGGAAAT  180

Query  181  GATGGATATTGCGCTGGTGGCTACCCATGGTACAGAGGATGTTTCTGTTTCTTCTCTTGC  240
            ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct  181  GATGGATATTGCGCTGGTGGCTACCCATGGTACAGATCATGTTTCTGTTTCTTCTCTTGC  240

Query  241  TAA  243
            |||
Sbjct  241  TAA  243


> AT5G44420.1 | Symbols: PDF1.2, PDF1.2A, LCR77 | plant defensin 
1.2 | chr5:17907069-17907598 REVERSE LENGTH=438
Length=438

 Score =  135 bits (73),  Expect = 1e-31
 Identities = 142/173 (82%), Gaps = 13/173 (8%)
 Strand=Plus/Plus

Query  1    ATGGCTAAGTTTTCTTCCATCATCACCCTTATCTTCGCTGCTCTTGTTCTCTTTGCTGAT  60
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  49   ATGGCTAAGTTTGCTTCCATCATCACCCTTATCTTCGCTGCTCTTGTTCTCTTTGCTGCT  108

Query  61   TTAGAAGCACCGGTAATTGTGAAAGCA--GA-GCTT-TGCAA-AAGGGAAAGTGAGACAT  115
            || || ||||||| ||| ||| |||||  || | || ||| | |||  || ||| |||||
Sbjct  109  TTCGACGCACCGGCAATGGTGGAAGCACAGAAG-TTGTGCGAGAAGCCAA-GTGGGACAT  166

Query  116  GGTCAGGACGTT-GTGTAAACGATTA-T-CAGTGCAGGGATCATTGCATTAAC  165
            |||||||  ||| | | |||| | || | || |||| | |||| |||||||||
Sbjct  167  GGTCAGGG-GTTTGCGGAAAC-AGTAATGCA-TGCAAGAATCAGTGCATTAAC  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5