BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914895

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48540.1 | Symbols:  | Cytidine/deoxycytidylate deaminase fa...   239    8e-63


> AT3G48540.1 | Symbols:  | Cytidine/deoxycytidylate deaminase 
family protein | chr3:17989798-17992015 REVERSE LENGTH=699
Length=699

 Score =  239 bits (129),  Expect = 8e-63
 Identities = 143/150 (95%), Gaps = 0/150 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGATTGCTTTCCTTTCTGCAGAACGATCCAAGGATCCTAACAGGCACGTTGGTGCG  60
            ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || 
Sbjct  217  ATGGCGATTGCATTCCTTTCTGCAGAACGATCCAAGGATCCTAACAGGCAGGTTGGCGCA  276

Query  61   TGTTTGGTGAGCCAAAATGGTGTCATTCTGGGGATTGGCTATAATGGTTTTCCAAGAGGC  120
            ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct  277  TGTTTGGTGAGCCAAAATGGTGTAATCCTTGGGATTGGCTATAATGGTTTTCCAAGAGGC  336

Query  121  TGCTCTGATGACAAACTTCCTTGGGCCAAG  150
            ||||||||||||||||||||||||||||||
Sbjct  337  TGCTCTGATGACAAACTTCCTTGGGCCAAG  366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9406352637


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5