BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914913
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56280.1 | Symbols: ATDI19, DI19 | drought-induced 19 | chr1... 893 0.0
> AT1G56280.1 | Symbols: ATDI19, DI19 | drought-induced 19 | chr1:21072855-21074877
REVERSE LENGTH=1185
Length=1185
Score = 893 bits (483), Expect = 0.0
Identities = 572/612 (93%), Gaps = 18/612 (3%)
Strand=Plus/Plus
Query 1 ATGGACGCTGATTCCAAGAGATTTCTAGCTACGCTTCGATCCCGATCTGAAATGTTAATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 ATGGACGCTGATTCCAAGAGATTTCTAGCTACGCTTCGATCCCGATCTGAAATGTTAATG 212
Query 61 GGCTTTGAAGAAATAGATGGAGATGATGATTTCCAGGAGGAGTTTGCTTGCCCGTTCTGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GGCTTTGAAGAAATAGATGGAGATGATGATTTCCAGGAGGAGTTTGCTTGCCCGTTCTGT 272
Query 121 GCAGAATCGTATGATATCATCGGTTTGTGTTGTCACATAGATGATGAACATACTTTAGAG 180
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 273 GCAGAATCGTATGATATCATCGGGTTGTGCTGTCACATAGATGATGAACATACTTTAGAG 332
Query 181 TCAAAGAACGCGGTGTGCCCTGTTTGCTCTCTAAAAGTGGGAGTTGATATCGTAGCGCAC 240
|| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 333 TCGAAGAACGCGGTATGCCCTGTTTGTTCTCTTAAAGTGGGAGTTGATATCGTAGCACAC 392
Query 241 ATAACGCTTCACCATGGGAGTTTATTTAAGTTGCAGCGAAAGAGAAAGTCACGGAAAAGT 300
| ||||||||||||| | | | | ||||||||||||||||| |||||
Sbjct 393 A-AACGCTTCACCAT----G---------G--G-A-CGAAAGAGAAAGTCACGAAAAAGC 434
Query 301 GGTACCAATTCGACACTTTCACTTCTTCGGAAAGAGCTAAGAGAAGGAGATCTACAGAGG 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 435 GGTACCAATTCGACACTTTCACTTCTTCGGAAAGAACTAAGAGAAGGAGATCTACAAAGG 494
Query 361 TTGTTAGGATTTACTTCTCGTAATGGTTCTGTTGCATCAAGTGGAACTCCCGATCCTCTC 420
||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 495 TTGTTAGGATTTACTTCTCGTAATGGTTCTGTTGCGTCAAGTGTAACTCCTGATCCTCTC 554
Query 421 CTGTCGTCATTTATCTCACCTACACGATCACAGAGTTCTCCTGTGACACGCCAAACCAAA 480
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 555 CTGTCGTCATTTATCTCACCTACACGATCACAGAGTTCTCCTGCGCCACGCCAAACCAAA 614
Query 481 AAAGTATCCGAGGAGAAACAGATAGAGCGCAAGAGACAAGTGTGCATCTCACCGGTCTCA 540
|| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 615 AACGTATCCGAGGATAAACAGATAGAGCGCAAGAGACAAGTGTTCATCTCACCGGTCTCG 674
Query 541 TCAAAAGATCGGGAAGAGAGGAGGCAAAAATCAGAGTTTGTTCAGAGGCTCTTGTCATCA 600
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 675 TTAAAAGATCGGGAAGAGAGGAGGCACAAATCAGAGTTTGTTCAGAGGCTCTTGTCATCA 734
Query 601 GCCATTTTCGAT 612
||||||||||||
Sbjct 735 GCCATTTTCGAT 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5