BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914916
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56310.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 2566 0.0
> AT1G56310.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr1:21082863-21085651 FORWARD
LENGTH=1857
Length=1857
Score = 2566 bits (1389), Expect = 0.0
Identities = 1572/1661 (95%), Gaps = 9/1661 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTTGGATTCTGAAGAAGAAGCTGAGTTGGTGGTAATAAAAGATGAGAAAGCTGGA 60
||||||||||||||| | |||||||||| |||| |||||||| |||||||||| ||| |
Sbjct 1 ATGGGTTTGGATTCT--A-AAGAAGCTGATTTGGAGGTAATAAGAGATGAGAAATCTGAA 57
Query 61 GCAAACACTGTGTGTTTACATTCATTTTCAGATTTAACTTATGTGTCTCCTGTTGTGTTC 120
||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 58 GCAAACACTGTGTGTTTACATGCGTTTTCAGATTTAACCTATGTGTCTCCTGTTGTGTTC 117
Query 121 TTATACCTTCTCAAAGAATGTTATAAACATGGAAGCTTGAAGGCAACTAAAAAGTTCCAA 180
|||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 118 TTATACCTACTCAAAGAATGCTATAAACATGGTAGCTTGAAGGCAACAAAAAAGTTCCAA 177
Query 181 GCTTTGCAGTATCGAGTTCATCAAGTTCTAGCTAATAAACCTCAACCAGGACCTGCTACT 240
||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 GCTTTACAGTATCAAGTTCATCGAGTTCTAGCTAATAAACCTCAACCAGGACCTGCTACT 237
Query 241 TTCATTATTAAGTGTCTCACTGTGCTTCCTATGTTTGGGGTATATGGTGAAGGTTTTAGT 300
||||||||||| ||||||||| | |||||| | |||||||||||||||||||| ||||||
Sbjct 238 TTCATTATTAATTGTCTCACTTTACTTCCTTTATTTGGGGTATATGGTGAAGGCTTTAGT 297
Query 301 CATTTGGTTATATCGGCGCTACGCCGCTTCTTTAAATCAGTATCTGAACCAACAAGTGAA 360
||||| |||||||| || || ||||||||||||||| |||||||||||||||| ||||||
Sbjct 298 CATTTAGTTATATCAGCTCTTCGCCGCTTCTTTAAAACAGTATCTGAACCAACTAGTGAA 357
Query 361 GAAGATATGTCTTCT-GCTAGAAAACTAGCTGCTCAGTTCTTTCTTGCTACTGTTGGAGG 419
|||||||| | || | || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 358 GAAGATATTTGTT-TGGCGAGAAAGCTAGCTGCTCAGTTCTTCCTTGCTACTGTTGGTGG 416
Query 420 ATCTTTAACTTATGATGAGAAGGTGATGATGCATACTCTTAAAGTGTTTGATGTGGGGTT 479
|||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| ||||
Sbjct 417 ATCTTTAACTTATGATGAGAAGGTTATGGTGCATACTCTTAGAGTGTTTGATGTGAGGTT 476
Query 480 AACTAGTATCGATGAAGCTTTGTCTGTCTCGGAAGTTTGGCAGGGATATGGGTTTGCTAA 539
|||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 477 AACTAGTATCGATGAAGCCTTGTCTATCTCGGAAGTTTGGCAGAGATATGGGTTTGCTTG 536
Query 540 TGGAAATGTGTTTCTGGAACAATACATTTCTGACTTGATCAAGTCGAAATCTTTCATGAC 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGAAATGCGTTTCTGGAACAATACATTTCTGACTTGATCAAGTCGAAATCTTTCATGAC 596
Query 600 GGCTGTGACTCTGTTAGAGCATTTCTCTTTCCGTTTTCCTGGAGAAACTTTTCTTCAACA 659
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 597 GGCTGTGACTCTGTTAGAGCATTTCTCTTTCCGTTTCCCTGGAGAAACTTTTCTTCAACA 656
Query 660 AATGCTTGAGGATAAAGACTTT-CAAGCTGCAGAGAGATGGGCTACCTTCATGGGAAGGC 718
|||| ||||||||||| | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 657 AATGGTTGAGGATAAA-AATTTCCAAGCTGCAGAGAGATGGGCTACCTTCATGGGAAGGC 715
Query 719 CAAGTTTATGCATTCTTGTTCAAGAATATGGCTCAAGGAATATGCTAAAGCAGGCCTATA 778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 716 CAAGTTTATGCATTCTTGTTCAAGAGTATGGCTCAAGGAATATGCTAAAGCAGGCCTATA 775
Query 779 ATGTCATAAATAAGAACTATCTCCAGCAGGACTTTCCCGAATTGTATCACAAGTGTAAAG 838
|| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 776 ATATCATAAATAAGAACTATCTACAGCATGACTTTCCCGAATTGTATCACAAGTGTAAAG 835
Query 839 AAAGTGCTCTGAAGGTTCTAGCAGAAAAAGCATGCTGGGATGTTGCTGAAAATAAGACAA 898
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 836 AAAGTGCTCTGAAGGTTCTAGCAGAAAAAGCATGTTGGGATGTTGCTGAAATTAAGACAA 895
Query 899 AAGGTGATAGACAGCTTCTTAAGTATCTGGTATACTTGGCAATGGAAGCTGGGTACTTGG 958
||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct 896 AAGGTGATAGACAGCTTCTGAAGTATCTGGTATACTTGGCAGTGGAAGCTGGATACTTGG 955
Query 959 AGAAGG-TGAATGAACTGTGTGATCGATATTCACTTCAAGGTCTGCGAAAAGCACAAGAG 1017
|||||| || |||||||||| |||||||||||||||||||| |||| |||||||| ||||
Sbjct 956 AGAAGGTTG-ATGAACTGTGCGATCGATATTCACTTCAAGGGCTGCCAAAAGCACGAGAG 1014
Query 1018 GCTGAGATTGCTTTTGTTCAAAAAAGCTTTCTGCGTCTCAACGATCTAGCTGTGGAAGAT 1077
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 GCTGAGGTTGCTTTTGTTGAAAAAAGCTTTCTGCGTCTCAACGATCTAGCTGTAGAAGAT 1074
Query 1078 GTAGTTTGGGTTGATGAAGTCAATGAGTTGAGAAAAGCAACTTCTTTTCTTGAAGGATGT 1137
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1075 GTAGTTTGGGTTGATGAAGTCAACGAGTTGAGAAAAGCAACTTCTTTTCTTGAAGGATGT 1134
Query 1138 AGAGTTGTGGGTATTGACTGTGAATGGAAACCTAATTATATTAAAGGCAGTAAACAGAAC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AGAGTTGTGGGTATTGACTGTGAATGGAAACCTAATTATATTAAAGGCAGTAAACAGAAC 1194
Query 1198 AAGGTTTCAATCATGCAAATTGGATCTGATACCAAAATTTTCATATTGGACTTGATAAAG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AAGGTTTCAATCATGCAAATTGGATCTGATACCAAAATTTTCATATTGGACTTGATAAAG 1254
Query 1258 CTTTACAATGACGCCACTGAAATGCTGGACAACTGCCTTAGTCAGATTTTGCAATCGAAG 1317
||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1255 CTTTACAATGACGCCTCTGAAATTCTGGACAACTGCCTTAGTCACATTTTGCAATCGAAG 1314
Query 1318 AGTACATTAAAGCTCGGTTACAATTTTCAATGTGACGTCAAGCAGTTGGCGCTTTCTTAT 1377
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1315 AGTACATTAAAGCTCGGTTACAATTTTCAATGTGACATCAAGCAGTTGGCGCTTTCATAT 1374
Query 1378 GGAGATTTGAAATGTTTCGAGCGGTATGACATGTTGCTAGACATTCAAAATGTTTTTAAA 1437
|| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1375 GGGGATTTGAAATGTTTCGAGCGATACGACATGTTGCTAGACATTCAAAATGTTTTTAAT 1434
Query 1438 GAACCATTTGGTGGTTTAGCAGGACTAACGAAGAAAATATTGGGAGTGTCTTTGAACAAA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GAACCATTTGGTGGTTTAGCAGGACTAACGAAGAAAATATTGGGAGTGTCTTTGAACAAA 1494
Query 1498 ACAAGACGTAATAGCGACTGGGAACAAAGGCCTTTGACCCAGAATCAGCTTGAGTATGCT 1557
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1495 ACAAGACGCAATAGCGACTGGGAACAAAGGCCTTTGAGCCAGAATCAGCTTGAGTATGCT 1554
Query 1558 GCTCTTGATGCTGCAGTGCTGATTCACATATTTCGTCATGTTCGAGATCATCCTCCACAT 1617
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 1555 GCTCTTGATGCTGCAGTGTTGATTCACATATTTCGCCATGTTCGCGATCATCCTCCACAT 1614
Query 1618 GAAAGTAGTTCAGAGACAGTCCAGTGGAAATCTCACATTGT 1658
|| ||||||||||||||| |||||||||||||||||||||
Sbjct 1615 GACAGTAGTTCAGAGACAACCCAGTGGAAATCTCACATTGT 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5