BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914924
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56340.1 | Symbols: CRT1, CRT1a, AtCRT1a | calreticulin 1a |... 1668 0.0
AT1G09210.1 | Symbols: CRT1b, AtCRT1b | calreticulin 1b | chr1:... 1086 0.0
AT1G56390.1 | Symbols: | pseudogene, calreticulin, similar to ... 276 4e-73
> AT1G56340.1 | Symbols: CRT1, CRT1a, AtCRT1a | calreticulin 1a
| chr1:21089844-21092660 REVERSE LENGTH=1523
Length=1523
Score = 1668 bits (903), Expect = 0.0
Identities = 1124/1232 (91%), Gaps = 10/1232 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAAACTAAACTCTAAATTCATCTCGATCATTCTCTTCGCTCTCGTGGTAATCGTC 60
|||| |||||||||| ||||||||||||| | ||||| |||||||||||||| ||||||
Sbjct 31 ATGGCGAAACTAAACCCTAAATTCATCTCTTTGATTCTTTTCGCTCTCGTGGTGATCGTC 90
Query 61 TCTTCTGAAGTTATATTCGAGGAGCGATTCGATGACGGATGGGAGAAGAGATGGGTAAAA 120
||| |||||||||| ||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 91 TCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGATGGATGGGAGAAGAGATGGGTAAAA 150
Query 121 TCCGACTGGAAGAAAGATAACAACACTGCTGGGGAATGGAAACACACAGCTGGAAATTGG 180
|| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 151 TCTGACTGGAAGAAAGATGATAATACTGCTGGGGAATGGAAACACACAGCTGGAAATTGG 210
Query 181 TCTGGTGACGCTAACGATAAAGGTATCCAAACAAGCGAAGACAACAGATTCTACGCTATA 240
|||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 211 TCTGGTGATGCTAACGATAAAGGTATCCAAACTAGCGAGGACTACAGATTCTACGCTATA 270
Query 241 TCATCTGAATTCCCTGAGTTCAGCAACAAGGACAAGACCCTAGTCTTCCAATTCTCTGTC 300
||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 271 TCAGCTGAATTCCCTGAGTTTAGCAACAAGGATAAGACCTTAGTCTTCCAATTCTCTGTC 330
Query 301 AAGCATGAACAGAAGCTTGACTGTGGTGGTGGTTACATGAAGTTGCTTAGTGGTGATGTT 360
|||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||
Sbjct 331 AAGCATGAGCAGAAGCTTGACTGTGGTGGTGGCTACATGAAGTTGCTAAGTGATGATGTT 390
Query 361 GACCAGAA-AAATTTCGGAGGAGACACTCCTTACAGTATTATGTTTGGCCCTGATAAATG 419
||||||| ||||| ||||||||||||||||||||| ||||||||||| || |||| ||
Sbjct 391 GACCAGACGAAATT-CGGAGGAGACACTCCTTACAGCATTATGTTTGGGCCAGATATTTG 449
Query 420 TGG-TGACAACACTAAGAAAGTACATGCTATTCTTACATACAATGGAACAAACCATTTGA 478
||| | ||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 450 TGGCT-ACAGCACTAAGAAAGTACATGCTATCCTTACTTACAATGGAACCAACCATTTGA 508
Query 479 TCAAGAAGGAGGTCCCATGTGAGACTGACCAGCTTACTCATGTGTACACCTTCGTCCTCC 538
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 509 TCAAGAAGGAGGTCCCATGTGAGACTGATCAGCTTACTCACGTGTACACCTTCGTCCTCC 568
Query 539 GTCCAGATGCTACTTATAGTATTTTGATTGACAATGTTGAGAAGCAAACTGGTAGCCTCT 598
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 569 GTCCAGATGCTACTTACAGTATTTTGATTGATAATGTTGAGAAGCAAACTGGTAGCCTTT 628
Query 599 CCTCTGACTGGGATCTCCTCCCAGCAAAGAAGATTAAGGATCCAAGTGCCAAGAAGCCTG 658
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 629 ACTCTGACTGGGATCTTCTCCCAGCAAAGAAGATTAAGGATCCAAGTGCTAAGAAGCCTG 688
Query 659 AGGACTGGGATGACAAAAAGTACATTCCTGATCCGGAAGACACTAAGCCAGCGGGATACG 718
||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 689 AGGACTGGGATGACAAAGAGTACATTCCAGATCCAGAAGACACTAAGCCAGCGGGATATG 748
Query 719 ATGACATCCCTAAGGAGATTCCAGACACTGATGCAAAGAAGCCTGAAGATTGGGATGATG 778
|||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 749 ATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGCCTGAGGACTGGGATGATG 808
Query 779 AAAAATCTGGTGAGTGGACTACCCCAACCATTCCTAATCCGGAGTACAAGGGTGTATGGA 838
|| || ||||||||||||| |||| |||||||| || || |||||||| |||| |||||
Sbjct 809 AAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGA 868
Query 839 AGCCCAAGAAAATCAAGAACCCTAATTACAAGGGCAAGTGGAAGGCTCCAATGATCGACA 898
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 869 AGCCCAAGAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACA 928
Query 899 ACCCTGATTTCAAGGATGACCCAGAACTATATGTCTTCCCCAAATTGAAATATGTTGGGG 958
||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 929 ACCCTGAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAG 988
Query 959 TGGAGTTGTGGCAGGTGAAATCTGGATCCTTGTTCGACAATGTATTGGTAAGCGATGACC 1018
| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 989 TTGAGTTGTGGCAGGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACC 1048
Query 1019 CAGAGTACGCTAAGAAGTTGGCCGAAGAAACATGGGGAAAGAACAAGGATGCGGAGGAAG 1078
||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||
Sbjct 1049 CAGAGTACGCTAAGAAGTTGGCCGAGGAAACCTGGGGAAAGCACAAGGATGCGGAGAAAG 1108
Query 1079 CAGCATTTGAAGAAGCAGAGAAGAAAAGACAGGAAGAGGAATCAAAGGAACTTCTCGCTG 1138
|||||||||| ||||| |||||||| ||| ||||||||||||||||||| | ||| |||
Sbjct 1109 CAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAGGAATCAAAGGA--TGCTC-CTG 1165
Query 1139 AAGTTGAATCTGACGATAAGGAAGAAGCTGAAAATGATGACAATGAAGGAGATGACTCGG 1198
| ||||| |||| | |||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 1166 C--T-GAATCCGACGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAG 1222
Query 1199 ACAACAAATCGAAGTTTGAGGAAACTAAGGAG 1230
|||| |||| |||| ||||||||| ||||||
Sbjct 1223 ACAATGAATCAAAGTCTGAGGAAACCAAGGAG 1254
> AT1G09210.1 | Symbols: CRT1b, AtCRT1b | calreticulin 1b | chr1:2972842-2976750
REVERSE LENGTH=1745
Length=1745
Score = 1086 bits (588), Expect = 0.0
Identities = 911/1068 (85%), Gaps = 18/1068 (2%)
Strand=Plus/Plus
Query 69 AGTTATATTCGAGGAGCGATTCGATGACGGATGGGAGAAGAGATGGGTAAAATCCGACTG 128
|||||| ||||||||||| || ||||| || |||||||| |||||||| ||||| || ||
Sbjct 164 AGTTATTTTCGAGGAGCGCTTTGATGATGGCTGGGAGAACAGATGGGTTAAATCTGAGTG 223
Query 129 GAAGAAAGATAACAACACTGCTGGGGAATGGAAACACACAGCTGGAAATTGGTCTGGTGA 188
|||||| ||| | |||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 224 GAAGAAGGATGATAACACTGCTGGGGAGTGGAAGCACACTGCGGGAAATTGGTCTGGTGA 283
Query 189 CGCTAACGATAAAGGTATCCAAACAAGCGAAGACAACAGATTCTACGCTATATCATCTGA 248
||||||||||||||||||||| || || |||||| ||||||||||||| || ||| ||||
Sbjct 284 CGCTAACGATAAAGGTATCCAGACCAGTGAAGACTACAGATTCTACGCCATTTCAGCTGA 343
Query 249 ATTCCCTGAGTTCAGCAACAAGGACAAGACCCTAGTCTTCCAATTCTCTGTCAAGCATGA 308
|||||||| ||||| ||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 344 GTTCCCTGAATTCAGTAACAAGGACAAGACCTTAGTCTTCCAATTCTCAGTCAAGCACGA 403
Query 309 ACAGAAGCTTGACTGTGGTGGTGGTTACATGAAGTTGCTTAGTGGTGATGTTGACCAGAA 368
|| ||||||||||| |||||||| ||||||||| | || ||||||||||||||||| ||
Sbjct 404 GCAAAAGCTTGACTGCGGTGGTGGCTACATGAAGCTACTAAGTGGTGATGTTGACCAAAA 463
Query 369 -AAATTTCGGAGGAGACACTCCTTACAGTATTATGTTTGGCCCTGATAAATGTGG-TGAC 426
|||||| || |||||||| || |||||||| |||||||| ||||||| ||||| | ||
Sbjct 464 GAAATTT-GGTGGAGACACACCATACAGTATCATGTTTGGTCCTGATATCTGTGGCT-AC 521
Query 427 AACACTAAGAAAGTACATGCTATTCTTACATACAATGGAA-CAAACCATTTGATCAAGAA 485
| ||| |||||||| |||||||| ||||| || |||| || | ||||| ||||||||||
Sbjct 522 AGCACAAAGAAAGTGCATGCTATCCTTACCTATAATG-AAGCCAACCACCTGATCAAGAA 580
Query 486 GGAGGTCCCATGTGAGACTGACCAGCTTACTCATGTGTACACCTTCGTCCTCCGTCCAGA 545
|| || |||||||| ||||||||||| || ||||||||||| || ||||||| |||||
Sbjct 581 AGATGTTCCATGTGAAACTGACCAGCTCACCCATGTGTACACATTTATCCTCCGCCCAGA 640
Query 546 TGCTACTTATAGTATTTTGATTGACAATGTTGAGAAGCAAACTGGTAGCCTCTCCTCTGA 605
||||||||| || ||| | || |||||||||||||| |||||||||||||| | ||||||
Sbjct 641 TGCTACTTACAGCATTCTCATCGACAATGTTGAGAAACAAACTGGTAGCCTTTACTCTGA 700
Query 606 CTGGGATCTCCTCCCAGCAAAGAAGATTAAGGATCCAAGTGCCAAGAAGCCTGAGGACTG 665
||||||||| |||||| | |||||||| ||||| || || ||||||||||||||||||||
Sbjct 701 CTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAGCCTGAGGACTG 760
Query 666 GGATGA-CAAAAAGTACATTCCTGATCCGGAAGACACTAAGCCAG-CGGGATACGATGAC 723
||| || ||| || |||||| |||| || ||||||| || || | ||| ||||||||
Sbjct 761 GGACGAACAAGAA-TACATTTCTGACCCTGAAGACAAGAAACCTGACGGT-TACGATGAT 818
Query 724 ATCCCTAAGGAGATTCCAGACACTGA-TGCAAAGAAGCCTGAAGATTGGGATGATGAAAA 782
|||||||||||||| |||||||| || | ||||||||||||| || |||||||||||| |
Sbjct 819 ATCCCTAAGGAGATCCCAGACACCGACT-CAAAGAAGCCTGAGGACTGGGATGATGAAGA 877
Query 783 ATCTGGTGAGTGGACTACCCCAACCATTCCTAATCCGGAGTACAAGGGTGTATGGAAGCC 842
| ||||||||||||| ||||||| || || || || ||||||| ||||| |||||||||
Sbjct 878 AGATGGTGAGTGGACTGCCCCAACAATCCCCAACCCTGAGTACATGGGTGAATGGAAGCC 937
Query 843 CAAGAAAATCAAGAACCCTAATTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCC 902
||| ||||||||||||| || ||||||||||||||| |||||||| |||| ||||||||
Sbjct 938 TAAGCAAATCAAGAACCCCAACTACAAGGGCAAGTGGGAGGCTCCATTGATTGACAACCC 997
Query 903 TGATTTCAAGGATGACCCAGAACTATATGTCTTCCCCAAATTGAAATATGTTGGGGTGGA 962
||| ||||||||||||||||| || || ||||||||||| ||||||||||||| | ||
Sbjct 998 TGACTTCAAGGATGACCCAGAGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGA 1057
Query 963 GTTGTGGCAGGTGAAATCTGGATCCTTGTTCGACAATGTATTGGTAAGCGATGACCCAGA 1022
||||||||||||||||| ||||| |||||||||||||| ||| | |||||||||||||
Sbjct 1058 ATTGTGGCAGGTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGA 1117
Query 1023 GTACGCTAAGAAGTTGGCCGAAGAAACATGGGGAAAGAACAAGGATGCGGAGGAAGCAGC 1082
|| || ||||||||||| || ||||||||||||||| ||||||||||||| |||||||
Sbjct 1118 CTATGCCAAGAAGTTGGCAGATGAAACATGGGGAAAGCTCAAGGATGCGGAGAAAGCAGC 1177
Query 1083 ATTT-GAAGAAGCAGAGAAGAA-AA-GACAGGAAGAGGAATCAAAGGA 1127
||| || || || |||||||| || || |||||||||||| |||||
Sbjct 1178 -TTTCGATGAGGCTGAGAAGAAGAATGA--GGAAGAGGAATCCAAGGA 1222
> AT1G56390.1 | Symbols: | pseudogene, calreticulin, similar to
calreticulin GI:2052379 (Arabidopsis thaliana); blastp match
of 85% identity and 8.6e-110 P-value to SP|Q40401|CRTC_NICPL
Calreticulin precursor. (Leadwort-leaved tobacco) {Nicotiana
plumbaginifolia} | chr1:21107988-21110752 FORWARD LENGTH=2765
Length=2765
Score = 276 bits (149), Expect = 4e-73
Identities = 167/176 (95%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 584 AAACTGGTAGCCTCTCCTCTGACTGGGATCTCCTCCCAGCAAAGAAGATTAAGGATCCAA 643
||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1076 AAATTGGTAGCCTCTCCTCTGACTGGGATCTCCTCCCACCAAAGAAGATCAAGGATCCAA 1135
Query 644 GTGCCAAGAAGCCTGAGGACTGGGATGACAAAAAGTACATTCCTGATCCGGAAGACACTA 703
|| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1136 GTACCAAGAAGCCTGACGACTGGGATGAGAAAAAGTACATTCCTGATCCGGAAGACACTA 1195
Query 704 AGCCAGCGGGATACGATGACATCCCTAAGGAGATTCCAGACACTGATGCAAAGAAG 759
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 1196 AGCCAGCGGGATACGATGACATCCCCAAGGAGATTCCAGACGCTGATGCAGAGAAG 1251
Score = 169 bits (91), Expect = 7e-41
Identities = 104/110 (95%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 97 GGATGGGAGAAGAGATGGGTAAAATCCGACTGGAAGAAAGATAACAACACTGCTGGGGAA 156
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 584 GGATGGGAGAAGAGATGCGTAAAATCCGACTGGAGGAAAGATAACAACACTGCTGGGGAA 643
Query 157 TGGAAACACACAGCTGGAAATTGGTCTGGTGACGCTAACGATAAAGGTAT 206
|||||||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct 644 TGGAAACACA--GCTGGAAATTGGTCTGGTGATGCTAACGATAGAGGTAT 691
Score = 111 bits (60), Expect = 1e-23
Identities = 60/60 (100%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 845 AGAAAATCAAGAACCCTAATTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 AGAAAATCAAGAACCCTAATTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG 1563
Score = 87.9 bits (47), Expect = 2e-16
Identities = 54/57 (95%), Gaps = 2/57 (4%)
Strand=Plus/Plus
Query 1069 GCGGAGGAAGCAGCATTTGAAGAAGCAGAGAAGAAAAGACAGGAAGAGG-AAT-CAA 1123
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 2122 GCGGATGAAGCAGCATTTGAAGAAGCAGAGAAGAAAAGACAGGAAGAGGTAATACAA 2178
Score = 75.0 bits (40), Expect = 2e-12
Identities = 43/44 (98%), Gaps = 1/44 (2%)
Strand=Plus/Plus
Query 1115 AGGAATCAAAGGAACTTCTCGCTGAAGTTGAATCTGACGATAAG 1158
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2274 AGGAATCAAAGGAACTTCTCGCTGAAGTTGAATCTGACG-TAAG 2316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5