BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg914924 Length=1257 Score E Sequences producing significant alignments: (Bits) Value AT1G56340.1 | Symbols: CRT1, CRT1a, AtCRT1a | calreticulin 1a |... 1668 0.0 AT1G09210.1 | Symbols: CRT1b, AtCRT1b | calreticulin 1b | chr1:... 1086 0.0 AT1G56390.1 | Symbols: | pseudogene, calreticulin, similar to ... 276 4e-73 > AT1G56340.1 | Symbols: CRT1, CRT1a, AtCRT1a | calreticulin 1a | chr1:21089844-21092660 REVERSE LENGTH=1523 Length=1523 Score = 1668 bits (903), Expect = 0.0 Identities = 1124/1232 (91%), Gaps = 10/1232 (1%) Strand=Plus/Plus Query 1 ATGGGGAAACTAAACTCTAAATTCATCTCGATCATTCTCTTCGCTCTCGTGGTAATCGTC 60 |||| |||||||||| ||||||||||||| | ||||| |||||||||||||| |||||| Sbjct 31 ATGGCGAAACTAAACCCTAAATTCATCTCTTTGATTCTTTTCGCTCTCGTGGTGATCGTC 90 Query 61 TCTTCTGAAGTTATATTCGAGGAGCGATTCGATGACGGATGGGAGAAGAGATGGGTAAAA 120 ||| |||||||||| ||||||||| |||||| || |||||||||||||||||||||||| Sbjct 91 TCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGATGGATGGGAGAAGAGATGGGTAAAA 150 Query 121 TCCGACTGGAAGAAAGATAACAACACTGCTGGGGAATGGAAACACACAGCTGGAAATTGG 180 || ||||||||||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct 151 TCTGACTGGAAGAAAGATGATAATACTGCTGGGGAATGGAAACACACAGCTGGAAATTGG 210 Query 181 TCTGGTGACGCTAACGATAAAGGTATCCAAACAAGCGAAGACAACAGATTCTACGCTATA 240 |||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||||| Sbjct 211 TCTGGTGATGCTAACGATAAAGGTATCCAAACTAGCGAGGACTACAGATTCTACGCTATA 270 Query 241 TCATCTGAATTCCCTGAGTTCAGCAACAAGGACAAGACCCTAGTCTTCCAATTCTCTGTC 300 ||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| Sbjct 271 TCAGCTGAATTCCCTGAGTTTAGCAACAAGGATAAGACCTTAGTCTTCCAATTCTCTGTC 330 Query 301 AAGCATGAACAGAAGCTTGACTGTGGTGGTGGTTACATGAAGTTGCTTAGTGGTGATGTT 360 |||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||| Sbjct 331 AAGCATGAGCAGAAGCTTGACTGTGGTGGTGGCTACATGAAGTTGCTAAGTGATGATGTT 390 Query 361 GACCAGAA-AAATTTCGGAGGAGACACTCCTTACAGTATTATGTTTGGCCCTGATAAATG 419 ||||||| ||||| ||||||||||||||||||||| ||||||||||| || |||| || Sbjct 391 GACCAGACGAAATT-CGGAGGAGACACTCCTTACAGCATTATGTTTGGGCCAGATATTTG 449 Query 420 TGG-TGACAACACTAAGAAAGTACATGCTATTCTTACATACAATGGAACAAACCATTTGA 478 ||| | ||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct 450 TGGCT-ACAGCACTAAGAAAGTACATGCTATCCTTACTTACAATGGAACCAACCATTTGA 508 Query 479 TCAAGAAGGAGGTCCCATGTGAGACTGACCAGCTTACTCATGTGTACACCTTCGTCCTCC 538 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 509 TCAAGAAGGAGGTCCCATGTGAGACTGATCAGCTTACTCACGTGTACACCTTCGTCCTCC 568 Query 539 GTCCAGATGCTACTTATAGTATTTTGATTGACAATGTTGAGAAGCAAACTGGTAGCCTCT 598 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | Sbjct 569 GTCCAGATGCTACTTACAGTATTTTGATTGATAATGTTGAGAAGCAAACTGGTAGCCTTT 628 Query 599 CCTCTGACTGGGATCTCCTCCCAGCAAAGAAGATTAAGGATCCAAGTGCCAAGAAGCCTG 658 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 629 ACTCTGACTGGGATCTTCTCCCAGCAAAGAAGATTAAGGATCCAAGTGCTAAGAAGCCTG 688 Query 659 AGGACTGGGATGACAAAAAGTACATTCCTGATCCGGAAGACACTAAGCCAGCGGGATACG 718 ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| | Sbjct 689 AGGACTGGGATGACAAAGAGTACATTCCAGATCCAGAAGACACTAAGCCAGCGGGATATG 748 Query 719 ATGACATCCCTAAGGAGATTCCAGACACTGATGCAAAGAAGCCTGAAGATTGGGATGATG 778 |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct 749 ATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGCCTGAGGACTGGGATGATG 808 Query 779 AAAAATCTGGTGAGTGGACTACCCCAACCATTCCTAATCCGGAGTACAAGGGTGTATGGA 838 || || ||||||||||||| |||| |||||||| || || |||||||| |||| ||||| Sbjct 809 AAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGA 868 Query 839 AGCCCAAGAAAATCAAGAACCCTAATTACAAGGGCAAGTGGAAGGCTCCAATGATCGACA 898 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 869 AGCCCAAGAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACA 928 Query 899 ACCCTGATTTCAAGGATGACCCAGAACTATATGTCTTCCCCAAATTGAAATATGTTGGGG 958 ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| | Sbjct 929 ACCCTGAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAG 988 Query 959 TGGAGTTGTGGCAGGTGAAATCTGGATCCTTGTTCGACAATGTATTGGTAAGCGATGACC 1018 | ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct 989 TTGAGTTGTGGCAGGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACC 1048 Query 1019 CAGAGTACGCTAAGAAGTTGGCCGAAGAAACATGGGGAAAGAACAAGGATGCGGAGGAAG 1078 ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||| Sbjct 1049 CAGAGTACGCTAAGAAGTTGGCCGAGGAAACCTGGGGAAAGCACAAGGATGCGGAGAAAG 1108 Query 1079 CAGCATTTGAAGAAGCAGAGAAGAAAAGACAGGAAGAGGAATCAAAGGAACTTCTCGCTG 1138 |||||||||| ||||| |||||||| ||| ||||||||||||||||||| | ||| ||| Sbjct 1109 CAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAGGAATCAAAGGA--TGCTC-CTG 1165 Query 1139 AAGTTGAATCTGACGATAAGGAAGAAGCTGAAAATGATGACAATGAAGGAGATGACTCGG 1198 | ||||| |||| | |||||||||| ||| ||||||||||||||||||||||||| | Sbjct 1166 C--T-GAATCCGACGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAG 1222 Query 1199 ACAACAAATCGAAGTTTGAGGAAACTAAGGAG 1230 |||| |||| |||| ||||||||| |||||| Sbjct 1223 ACAATGAATCAAAGTCTGAGGAAACCAAGGAG 1254 > AT1G09210.1 | Symbols: CRT1b, AtCRT1b | calreticulin 1b | chr1:2972842-2976750 REVERSE LENGTH=1745 Length=1745 Score = 1086 bits (588), Expect = 0.0 Identities = 911/1068 (85%), Gaps = 18/1068 (2%) Strand=Plus/Plus Query 69 AGTTATATTCGAGGAGCGATTCGATGACGGATGGGAGAAGAGATGGGTAAAATCCGACTG 128 |||||| ||||||||||| || ||||| || |||||||| |||||||| ||||| || || Sbjct 164 AGTTATTTTCGAGGAGCGCTTTGATGATGGCTGGGAGAACAGATGGGTTAAATCTGAGTG 223 Query 129 GAAGAAAGATAACAACACTGCTGGGGAATGGAAACACACAGCTGGAAATTGGTCTGGTGA 188 |||||| ||| | |||||||||||||| ||||| ||||| || ||||||||||||||||| Sbjct 224 GAAGAAGGATGATAACACTGCTGGGGAGTGGAAGCACACTGCGGGAAATTGGTCTGGTGA 283 Query 189 CGCTAACGATAAAGGTATCCAAACAAGCGAAGACAACAGATTCTACGCTATATCATCTGA 248 ||||||||||||||||||||| || || |||||| ||||||||||||| || ||| |||| Sbjct 284 CGCTAACGATAAAGGTATCCAGACCAGTGAAGACTACAGATTCTACGCCATTTCAGCTGA 343 Query 249 ATTCCCTGAGTTCAGCAACAAGGACAAGACCCTAGTCTTCCAATTCTCTGTCAAGCATGA 308 |||||||| ||||| ||||||||||||||| |||||||||||||||| |||||||| || Sbjct 344 GTTCCCTGAATTCAGTAACAAGGACAAGACCTTAGTCTTCCAATTCTCAGTCAAGCACGA 403 Query 309 ACAGAAGCTTGACTGTGGTGGTGGTTACATGAAGTTGCTTAGTGGTGATGTTGACCAGAA 368 || ||||||||||| |||||||| ||||||||| | || ||||||||||||||||| || Sbjct 404 GCAAAAGCTTGACTGCGGTGGTGGCTACATGAAGCTACTAAGTGGTGATGTTGACCAAAA 463 Query 369 -AAATTTCGGAGGAGACACTCCTTACAGTATTATGTTTGGCCCTGATAAATGTGG-TGAC 426 |||||| || |||||||| || |||||||| |||||||| ||||||| ||||| | || Sbjct 464 GAAATTT-GGTGGAGACACACCATACAGTATCATGTTTGGTCCTGATATCTGTGGCT-AC 521 Query 427 AACACTAAGAAAGTACATGCTATTCTTACATACAATGGAA-CAAACCATTTGATCAAGAA 485 | ||| |||||||| |||||||| ||||| || |||| || | ||||| |||||||||| Sbjct 522 AGCACAAAGAAAGTGCATGCTATCCTTACCTATAATG-AAGCCAACCACCTGATCAAGAA 580 Query 486 GGAGGTCCCATGTGAGACTGACCAGCTTACTCATGTGTACACCTTCGTCCTCCGTCCAGA 545 || || |||||||| ||||||||||| || ||||||||||| || ||||||| ||||| Sbjct 581 AGATGTTCCATGTGAAACTGACCAGCTCACCCATGTGTACACATTTATCCTCCGCCCAGA 640 Query 546 TGCTACTTATAGTATTTTGATTGACAATGTTGAGAAGCAAACTGGTAGCCTCTCCTCTGA 605 ||||||||| || ||| | || |||||||||||||| |||||||||||||| | |||||| Sbjct 641 TGCTACTTACAGCATTCTCATCGACAATGTTGAGAAACAAACTGGTAGCCTTTACTCTGA 700 Query 606 CTGGGATCTCCTCCCAGCAAAGAAGATTAAGGATCCAAGTGCCAAGAAGCCTGAGGACTG 665 ||||||||| |||||| | |||||||| ||||| || || |||||||||||||||||||| Sbjct 701 CTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAGCCTGAGGACTG 760 Query 666 GGATGA-CAAAAAGTACATTCCTGATCCGGAAGACACTAAGCCAG-CGGGATACGATGAC 723 ||| || ||| || |||||| |||| || ||||||| || || | ||| |||||||| Sbjct 761 GGACGAACAAGAA-TACATTTCTGACCCTGAAGACAAGAAACCTGACGGT-TACGATGAT 818 Query 724 ATCCCTAAGGAGATTCCAGACACTGA-TGCAAAGAAGCCTGAAGATTGGGATGATGAAAA 782 |||||||||||||| |||||||| || | ||||||||||||| || |||||||||||| | Sbjct 819 ATCCCTAAGGAGATCCCAGACACCGACT-CAAAGAAGCCTGAGGACTGGGATGATGAAGA 877 Query 783 ATCTGGTGAGTGGACTACCCCAACCATTCCTAATCCGGAGTACAAGGGTGTATGGAAGCC 842 | ||||||||||||| ||||||| || || || || ||||||| ||||| ||||||||| Sbjct 878 AGATGGTGAGTGGACTGCCCCAACAATCCCCAACCCTGAGTACATGGGTGAATGGAAGCC 937 Query 843 CAAGAAAATCAAGAACCCTAATTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCC 902 ||| ||||||||||||| || ||||||||||||||| |||||||| |||| |||||||| Sbjct 938 TAAGCAAATCAAGAACCCCAACTACAAGGGCAAGTGGGAGGCTCCATTGATTGACAACCC 997 Query 903 TGATTTCAAGGATGACCCAGAACTATATGTCTTCCCCAAATTGAAATATGTTGGGGTGGA 962 ||| ||||||||||||||||| || || ||||||||||| ||||||||||||| | || Sbjct 998 TGACTTCAAGGATGACCCAGAGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGA 1057 Query 963 GTTGTGGCAGGTGAAATCTGGATCCTTGTTCGACAATGTATTGGTAAGCGATGACCCAGA 1022 ||||||||||||||||| ||||| |||||||||||||| ||| | ||||||||||||| Sbjct 1058 ATTGTGGCAGGTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGA 1117 Query 1023 GTACGCTAAGAAGTTGGCCGAAGAAACATGGGGAAAGAACAAGGATGCGGAGGAAGCAGC 1082 || || ||||||||||| || ||||||||||||||| ||||||||||||| ||||||| Sbjct 1118 CTATGCCAAGAAGTTGGCAGATGAAACATGGGGAAAGCTCAAGGATGCGGAGAAAGCAGC 1177 Query 1083 ATTT-GAAGAAGCAGAGAAGAA-AA-GACAGGAAGAGGAATCAAAGGA 1127 ||| || || || |||||||| || || |||||||||||| ||||| Sbjct 1178 -TTTCGATGAGGCTGAGAAGAAGAATGA--GGAAGAGGAATCCAAGGA 1222 > AT1G56390.1 | Symbols: | pseudogene, calreticulin, similar to calreticulin GI:2052379 (Arabidopsis thaliana); blastp match of 85% identity and 8.6e-110 P-value to SP|Q40401|CRTC_NICPL Calreticulin precursor. (Leadwort-leaved tobacco) {Nicotiana plumbaginifolia} | chr1:21107988-21110752 FORWARD LENGTH=2765 Length=2765 Score = 276 bits (149), Expect = 4e-73 Identities = 167/176 (95%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 584 AAACTGGTAGCCTCTCCTCTGACTGGGATCTCCTCCCAGCAAAGAAGATTAAGGATCCAA 643 ||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 1076 AAATTGGTAGCCTCTCCTCTGACTGGGATCTCCTCCCACCAAAGAAGATCAAGGATCCAA 1135 Query 644 GTGCCAAGAAGCCTGAGGACTGGGATGACAAAAAGTACATTCCTGATCCGGAAGACACTA 703 || ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1136 GTACCAAGAAGCCTGACGACTGGGATGAGAAAAAGTACATTCCTGATCCGGAAGACACTA 1195 Query 704 AGCCAGCGGGATACGATGACATCCCTAAGGAGATTCCAGACACTGATGCAAAGAAG 759 ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| Sbjct 1196 AGCCAGCGGGATACGATGACATCCCCAAGGAGATTCCAGACGCTGATGCAGAGAAG 1251 Score = 169 bits (91), Expect = 7e-41 Identities = 104/110 (95%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 97 GGATGGGAGAAGAGATGGGTAAAATCCGACTGGAAGAAAGATAACAACACTGCTGGGGAA 156 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 584 GGATGGGAGAAGAGATGCGTAAAATCCGACTGGAGGAAAGATAACAACACTGCTGGGGAA 643 Query 157 TGGAAACACACAGCTGGAAATTGGTCTGGTGACGCTAACGATAAAGGTAT 206 |||||||||| |||||||||||||||||||| |||||||||| |||||| Sbjct 644 TGGAAACACA--GCTGGAAATTGGTCTGGTGATGCTAACGATAGAGGTAT 691 Score = 111 bits (60), Expect = 1e-23 Identities = 60/60 (100%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 845 AGAAAATCAAGAACCCTAATTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG 904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 AGAAAATCAAGAACCCTAATTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG 1563 Score = 87.9 bits (47), Expect = 2e-16 Identities = 54/57 (95%), Gaps = 2/57 (4%) Strand=Plus/Plus Query 1069 GCGGAGGAAGCAGCATTTGAAGAAGCAGAGAAGAAAAGACAGGAAGAGG-AAT-CAA 1123 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 2122 GCGGATGAAGCAGCATTTGAAGAAGCAGAGAAGAAAAGACAGGAAGAGGTAATACAA 2178 Score = 75.0 bits (40), Expect = 2e-12 Identities = 43/44 (98%), Gaps = 1/44 (2%) Strand=Plus/Plus Query 1115 AGGAATCAAAGGAACTTCTCGCTGAAGTTGAATCTGACGATAAG 1158 ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2274 AGGAATCAAAGGAACTTCTCGCTGAAGTTGAATCTGACG-TAAG 2316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61796870895 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5