BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914930

Length=285
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G56415.1 | Symbols:  | Expressed protein | chr1:21119829-211...   411    2e-114


> AT1G56415.1 | Symbols:  | Expressed protein | chr1:21119829-21120395 
FORWARD LENGTH=466
Length=466

 Score =  411 bits (222),  Expect = 2e-114
 Identities = 266/287 (93%), Gaps = 4/287 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGAGTATCATGAAGATAACGATTATCATGGTTTTGTTAGTGGTTGGCGTGAGTGCA  60
            |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct  67   ATGGTGAGTATCATGAAGATAATGATGATCATGGTTTTGTTAGTGGTTGGCGTCAGTGCA  126

Query  61   AAGACGGTGGAAGAATGTAAACGAACAACCTGCGCGACTAAATGTCATGACAGCAAAAGT  120
            ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct  127  AAGACGGTGGAAGAATGTAAACGAACAACGTGCGCGACTAAATGTCGTGACAGCAAAAGT  186

Query  121  TTTGCTTGTTCTGATTGTCTTC-TTCATTGCGCTTTTCCTGGAAGTGAGAGCAAAATAAG  179
            |||||||||||||||||| | | ||||||||||||||||||||||||| |||||||||||
Sbjct  187  TTTGCTTGTTCTGATTGTAT-CATTCATTGCGCTTTTCCTGGAAGTGAAAGCAAAATAAG  245

Query  180  TCAAGCACGGGCTTTCTGTCTCAGGGATTGTGATGTCGCTTGTCAACCAAGCAACGAC-T  238
            |||| |||||||||| ||||||||| ||||||||||||  ||||  ||||||||| || |
Sbjct  246  TCAACCACGGGCTTTGTGTCTCAGGAATTGTGATGTCGGATGTCGCCCAAGCAAC-ACCT  304

Query  239  GCTACCAACGTTGTATTAAACACTGTCCTCCAAAACCTTTGATTTGA  285
            |||||||||||||||||||||||||||||||  || |||||||||||
Sbjct  305  GCTACCAACGTTGTATTAAACACTGTCCTCCTCAATCTTTGATTTGA  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13119882489


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5