BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914949
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11530.1 | Symbols: CRK34 | cysteine-rich RLK (RECEPTOR-like... 1282 0.0
AT4G11521.1 | Symbols: | Receptor-like protein kinase-related ... 569 3e-161
AT4G23250.1 | Symbols: EMB1290, DUF26-21, RKC1, CRK17 | kinases... 326 6e-88
AT4G11500.1 | Symbols: | pseudogene, similar to putative recep... 320 3e-86
AT4G23260.1 | Symbols: CRK18 | cysteine-rich RLK (RECEPTOR-like... 307 2e-82
> AT4G11530.1 | Symbols: CRK34 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 34 | chr4:6987093-6989599 FORWARD LENGTH=2010
Length=2010
Score = 1282 bits (694), Expect = 0.0
Identities = 883/972 (91%), Gaps = 21/972 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCTCAAGTCTTT-ATTTTTTCCAACCTTCTTGATTTTTCTCATAAGCTTAGATTC 59
|||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGCTAAAG-ATTTCGTTTTTACCAACCTTCTTGATTTTTCTCATAAGCTTAGATTC 59
Query 60 TGTTTCTGAACAAGAAATCTGCTTCAATGGATTCTTTAAACCCAATAGTACATACGATTT 119
|||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 60 TGTTACTGCTCAAGAAATCTGTTTCAGTGGATTCTTTAAACCCAATAGTACATACGATTT 119
Query 120 AAACCGTCGTCAAATCCTCTCTACTCTTGCTTCTAATGTCACA-GCTCACAACGGCTTTT 178
|||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct 120 AAACCGTCGTCAAATCCTCTCTACTCTTTCTTCTAATGTCACAAG-TCACAACGGCTTTT 178
Query 179 TCAACTCCAAGATTGCTCAAGATCCCAATAGAGTCTTTATCATTGGTATGTGCATCCCGG 238
||||||||||| ||| ||||| ||||||||||||||| |||| ||| ||||||||||| |
Sbjct 179 TCAACTCCAAGTTTGGTCAAGCTCCCAATAGAGTCTTCATCAATGGCATGTGCATCCCTG 238
Query 239 GGACTAAACCAGAGACTTGTTCAGATTGTATCAAAGGTGCATCAGAGAAGATATCCA-AG 297
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||
Sbjct 239 GGACTAAACCAGAGACTTGTTCAGATTGTATTAAAGGTGCATCAGACAAGATATC-AGAG 297
Query 298 AGTTTTCCTAACCAAACAGATGCTTATACATGGCCAGATTGTTGTATGGTACGTTATTCC 357
|||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 AGTTGTCCTAACAAAACAGATGCTTATACATGGCCTGATTGTTGTATGGTACGTTATTCC 357
Query 358 AACATTTCATTCTCTGGATCACTCGTTATGGAACCATCTGAAACGT-TGTATCATACCGG 416
||| |||| |||||||| ||||||||||||||||| |||||||| | | |||||||| ||
Sbjct 358 AACGTTTCTTTCTCTGGTTCACTCGTTATGGAACCTTCTGAAAC-TCTCTATCATACGGG 416
Query 417 AGATATCGAAGATACGGGCACTAATTTAACAGTGTTTGATAGAATCTGGGACGAGTTAAT 476
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 417 AGATATCGAAGATACAGGCACTAATTTAACAGTGTTTGATAGAATTTGGGAAGAGTTAAT 476
Query 477 GCTCCGTACAATAACTGCAGCTTCATTGAGTAGTACTCATGGATCATCATTTGGACAAAA 536
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 477 GCTCCGTACAATAACTGCAGCTTCATTGAGTAGTAGTAATGGATCATCATTTGGACAAAA 536
Query 537 GTACTTTGGAGCTGAGGTTGCTTCATTGAC-AGCTTTCGAAACTATGTATGCGATGATGC 595
|||||||| ||||||||||||||||||||| | ||||| |||| ||||||||||||||||
Sbjct 537 GTACTTTGCAGCTGAGGTTGCTTCATTGACTA-CTTTCCAAACCATGTATGCGATGATGC 595
Query 596 AATGTACGCCGGATGTTTCTTCAAAAGATTGTGAGTTTTGTCTGAAGACAAGTGTTGGTG 655
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 596 AATGTACGCCGGATGTTTCTTCGAAAGATTGTGAGTTTTGTTTGAAGACAAGTGTTGGTG 655
Query 656 ATTATGAGTCTTGTTGTCGCGGTAAACAAGGTGGTGCGGTGATAAGACCGAGTTGCTTTG 715
|||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 656 ATTATGAGTCATGTTGCCGTGGTAAACAAGGTGGTGCGGTGATAAGACCAAGTTGCTTTG 715
Query 716 TCCGGTGGGATTTGTATCCTTATGCTGGAGCTTTTGAGAACATTGCATTGCCACCGCCTC 775
||||||||||||||||||||||||||||||||||||| || || |||| ||||||||||
Sbjct 716 TCCGGTGGGATTTGTATCCTTATGCTGGAGCTTTTGAAAATGTTACATTTCCACCGCCTC 775
Query 776 CAC-GCAGTCTTTACCTCAGCCACCGCTTTCTTTG---CCTCCTCCGGTTAGCGATCGGA 831
||| |||||||||||||||||||||| |||||||| |||||||| ||||||||| ||
Sbjct 776 CACCGCAGTCTTTACCTCAGCCACCGGTTTCTTTGATTCCTCCTCCAGTTAGCGATAGG- 834
Query 832 TGGAAA-ATCA-CTTTCGCCAGGGATTATGGTGGCAATTGTTGT-CCTATCGTCGTTATC 888
| ||| | || | || ||||||||| ||||| |||||||| |||||| | ||||||
Sbjct 835 -GCAAATA-CAACCATCAA-AGGGATTATTGTGGCTATTGTTGTTCCTATCATTGTTATC 891
Query 889 TTGGTTTTTCTTGTTGTAGTACTCGCGGTTTGTAGGAGAAGGAAATCATATAAAACAACT 948
||||||| ||||||||| |||||| |||||| || |||| ||| |||||||||||||||
Sbjct 892 TTGGTTTCACTTGTTGTACTACTCGTGGTTTGCAGAAGAAAGAAGTCATATAAAACAACT 951
Query 949 GAGGTCCAAGCT 960
||||| ||||||
Sbjct 952 GAGGTTCAAGCT 963
Score = 1153 bits (624), Expect = 0.0
Identities = 715/759 (94%), Gaps = 6/759 (1%)
Strand=Plus/Plus
Query 1144 GAGTTTGTCCCCAACAAAAGCCTCGACTA-TTTCTTGTTTGACCCTGCAAAACAAGGTGA 1202
|||||||| |||||||||||||| ||||| |||| | |||||||||||||||||||||||
Sbjct 1255 GAGTTTGTACCCAACAAAAGCCTTGACTATTTTC-TCTTTGACCCTGCAAAACAAGGTGA 1313
Query 1203 ACTAGACTGGACAAGACGGTACAATATCATTGGGGGGATTGCTCGAGGAATTCTATATCT 1262
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ACTAGATTGGACAAGACGGTACAATATCATTGGGGGGATTGCTCGAGGAATTCTATATCT 1373
Query 1263 TCATCATGATTCACGGCTTACAATCATACATCGTGATCTCAAAGCGAGTAACATTCTCTT 1322
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1374 TCATCAAGATTCACGGCTTACAATCATACACCGTGATCTCAAAGCGAGTAACATTCTCTT 1433
Query 1323 AGATGCCAATATGAACCCCAAAATTGCAGATTTTGGAATGGCAAGGATTTTTGGAGTTGA 1382
|||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1434 AGATGCTGATATGAACCCCAAAATTGCAGATTTTGGCATGGCGAGGATTTTTGGAGTTGA 1493
Query 1383 TCAAAGTCAAGCCAACACAAGAAGAATCGTCGGAACATTTGGTTATATGTCTCCAGAATA 1442
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1494 TCAAAGTCAAGCCAACACAAGAAGAATCGCCGGAACATTTGGTTATATGTCTCCAGAATA 1553
Query 1443 TGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTATAGCTTTGGAATATTGGTTCT 1502
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1554 TGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTATAGCTTTGGAGTATTGGTACT 1613
Query 1503 GGAGGTTATAAGTGGCaaaaa-aaCTAGCAGTTTCTACAACATTGATGATTCTGGTGGCA 1561
||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 1614 AGAGATTATAAGTGGCAAAAAGAA-TAGCAGTTTCTACAACATTGATGATTCTGGTAGCA 1672
Query 1562 ATTTGGTAACACACGCTTGGAGGCTTTGGAGAAACGGGTCACCGTTGGAACTGGTGGATC 1621
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1673 ATTTGGTAACACACGCTTGGAGACTTTGGAGAAATGGGTCACCGTTAGAACTGGTGGATC 1732
Query 1622 CAATCATAGGAGAAAGTTATCAGAGTAATGAGGCTACTAGATGCATCCATATCGCACTAT 1681
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1733 CAACCATAGGAGAAAGTTATCAGAGTAGCGAGGCTACTAGATGCATCCATATCGCACTAT 1792
Query 1682 TATGTGTTCAAGAAGATCCTGCAGATCGTCCGTTGTTACCAGCGATCATCTTGATGCTTA 1741
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1793 TATGTGTTCAAGAAGATCCTGCAGATCGTCCATTGTTACCAGCGATCATCATGATGCTTA 1852
Query 1742 CTAGTAGCACAACCACGTTACCTGTGCCTCGAGCGCCCGGATTTTGCCTAGGTGGACGTG 1801
|||||||||||||||| |||| |||||||||||||||||||||||||||| | || ||||
Sbjct 1853 CTAGTAGCACAACCACTTTACATGTGCCTCGAGCGCCCGGATTTTGCCTAAGCGGGCGTG 1912
Query 1802 AACTGGACCTGGATAGCT-TAGAGTATACCCAATCCACAAGCTGGTCTATTCCTTGTTCT 1860
| ||||| | |||| | | ||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1913 ATCTGGAACAGGATGG-TGTAGAGTATACCGAATCCACAAGCAGGTCTATTCCTGGTTCT 1971
Query 1861 ATCAATGATGCATCAATTACAGAGTTCGATCCTCGTTGA 1899
|||||||||||||| |||||||||||| |||||||||||
Sbjct 1972 ATCAATGATGCATCGATTACAGAGTTCTATCCTCGTTGA 2010
Score = 261 bits (141), Expect = 2e-68
Identities = 174/190 (92%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 956 AAGCTGCAACTGATAAGTTTTCAGACAATAACATGATAGGGCGAGGTGGATTTGGTGAAG 1015
||||||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 1016 AAGCTGCAACTGACAAGTTTTCGGACAGTAACATGATCGGGCGAGGTGGATTTGGTGAAG 1075
Query 1016 TTTACAGAGGAACA-TTTTCAACTGGAACAGAAGTAGCGGTGAAGAGACTGTCGAAAACA 1074
||||||| |||| | |||||| |||| | |||||||| |||||||||||||||||||||
Sbjct 1076 TTTACAGGGGAA-AGCTTTCAAGTGGACCTGAAGTAGCAGTGAAGAGACTGTCGAAAACA 1134
Query 1075 TCAGGACAAGGCGCGGAAGAGTTCAAGAATGAGGCTGTTCTTGTGACAAAGCTTCAGCAT 1134
||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1135 TCAGGACAAGGCGCGGAAGAGTTCAAGAATGAGGCTGTTCTTGTGTCGAAGCTTCAACAT 1194
Query 1135 AGGAATCTGG 1144
| ||||||||
Sbjct 1195 AAGAATCTGG 1204
> AT4G11521.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr4:6985565-6986715 FORWARD LENGTH=1151
Length=1151
Score = 569 bits (308), Expect = 3e-161
Identities = 639/793 (81%), Gaps = 45/793 (6%)
Strand=Plus/Plus
Query 1 ATGAAGCTCAAGT-CTTTATTTTTTCCAACCTTCTTGATTTTT-CTCATAAGCTTAGATT 58
|||| |||||| | |||||||||| |||| ||||||| ||||| ||||||| ||| ||||
Sbjct 58 ATGATGCTCAA-TACTTTATTTTTACCAATCTTCTTG-TTTTTCCTCATAACCTTTGATT 115
Query 59 CTGTTTCTGAACAAGAAATCTGCTTCAATGGATTCTTTAAACCCAATAGTACATACGATT 118
||||||| || | ||| |||||||||||||| ||||||||| ||| |||| ||||| |
Sbjct 116 ATGTTTCT--AC-ACAAACCTGCTTCAATGGATACTTTAAACCAAATGGTACTTACGACT 172
Query 119 TAAACCGTCGTCAAATCCTCTCTACTCTTGCTTCTAATGTCACAGCTCACAACGGCTTTT 178
|||||||||||| ||||||||| |||||||||| || |||||||||||||||||||| |
Sbjct 173 TAAACCGTCGTCGGATCCTCTCTTCTCTTGCTTCCAAAGTCACAGCTCACAACGGCTTCT 232
Query 179 TCAACTCCAAGAT-TGCTCAAGATCCCAA-TAGAGTCTTTATCATTGGTATGTGCATCCC 236
|| ||||| || || ||| |||| || | | | || |||||| | |||||||||||
Sbjct 233 ACAGCTCCACCATCGGC-CAAAATCCTAACCA-AATGTTCATCATTAGCATGTGCATCCC 290
Query 237 GGGGACTAAACCAGAGACTTGTTCAGATTGTATCAAAGG-TGCATCAGAGAAG-AT-ATC 293
|| ||||||||||||| ||||||||||| |||||||| | || |||| | | |
Sbjct 291 TGGAACTAAACCAGAGAGATGTTCAGATTGCATCAAAGGCT-CAACAGA-CGGCTTGTTA 348
Query 294 CAAGAGTTTTCCTAACCAAACAGATGCTTATACATGGCCAGATTGTTGTATGGTACGTTA 353
| | || | |||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct 349 CGA-AGCTGTCCTAACCAAACAGTTGGTTATGTATGGCCAGATTGTTGTATGGTACGTTA 407
Query 354 TTCCAACATTTCATTCTCTGGATCACTCGTTATGGAACCATCTGAAAC-GTTGTATCATA 412
|||||||||||| ||||||||||||||| |||||||||| ||| || | || || | ||
Sbjct 408 TTCCAACATTTCCTTCTCTGGATCACTCATTATGGAACCGTCTCAACCAGT-GTCTGATC 466
Query 413 CCGGAGATATCGAAGATACGGGCACTAATTTAACAGTGTTTGATAGAATCTGGGACGAGT 472
||| | ||||| | | | | |||| ||| ||||||||||||| ||||||||||
Sbjct 467 CCGCACCTATCG--G-T--GT----TGATTTGACATTGTTTGATAGAATATGGGACGAGT 517
Query 473 TAATG-CTCCGTACAATAACTGCAGCTTCATTGAGTAGTACTCATGGATCAT---CATTT 528
||||| ||| |||| |||||| ||||||| ||| | ||||||||||||| |||||
Sbjct 518 TAATGTCTC-GTACGATAACTACAGCTTC---GAG--G-ACTCATGGATCATTATCATTT 570
Query 529 GGACAAAAGTACTTTGGAGCTGAGGTTGCTTCATTGACAGCTTTCGAAACTATGTATGCG 588
|| || ||||||| || |||||| ||||||||||||||| ||||| ||||||| || |
Sbjct 571 GGGCATAAGTACTATGCAGCTGATGTTGCTTCATTGACAACTTTCCAAACTATATACACC 630
Query 589 ATGATGCAATGTACGCCGGATGTTTCTTCAAAAGATTGTGAGTTTTGTCTGAAGACAAGT 648
||| | |||||||| ||||||||||||||| ||||||||||||||| |||||| || |
Sbjct 631 ATGGTACAATGTACACCGGATGTTTCTTCAGGGGATTGTGAGTTTTGTTTGAAGAGAACT 690
Query 649 GTTGGTGATTATGAGTCTTGTTGTCGCGGTAAACAA-GGTGGTGCGGT-GATAAGACCGA 706
||| |||||| || |||||||||||| | || || ||||| | | ||||||| |
Sbjct 691 GTTCTTGATTACAAGAAATGTTGTCGCGGTCA-CATTGGCGGTGCTTTTG-TAAGACC-A 747
Query 707 GTT-GCTTTGTCCGGTGGGATTTGTATCCTTATGCTGGAGCTTTTGAGAACATTGCATTG 765
|| | ||| ||||||||||||||||||||| ||||||||||||||| || ||| | |||
Sbjct 748 TTTTGTTTTATCCGGTGGGATTTGTATCCTTTTGCTGGAGCTTTTGAAAATATTACGTTG 807
Query 766 CCACCGCCTCCAC 778
||| |||||||||
Sbjct 808 CCATCGCCTCCAC 820
> AT4G23250.1 | Symbols: EMB1290, DUF26-21, RKC1, CRK17 | kinases;protein
kinases | chr4:12162004-12167026 REVERSE LENGTH=3108
Length=3108
Score = 326 bits (176), Expect = 6e-88
Identities = 327/399 (82%), Gaps = 14/399 (4%)
Strand=Plus/Plus
Query 1147 TTTGTCCCCAACAAAAGCCTCGACTATTT-CTTGTTTGACCCT-GCAAAACAAGGTGAAC 1204
||||| || |||||||| ||||| ||||| ||| ||||||||| ||| | || | |
Sbjct 1285 TTTGTTCCAAACAAAAGTCTCGATTATTTCCTT-TTTGACCCTAACAAGAGAA-ATCAGT 1342
Query 1205 TAGACTGGACA---AGACGGTACAATATCATTGGGGGGATTGCTCGAGGAATTCTATATC 1261
| ||||||||| |||| | ||| ||||| || |||||| ||||||||||||||||||
Sbjct 1343 TGGACTGGACAGTGAGAC-G--CAACATCATCGGTGGGATTACTCGAGGAATTCTATATC 1399
Query 1262 TTCATCATGATTCACGGCTTACAATCATACATCGTGATCTCAAAGCGAGTAACATTCTCT 1321
||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 1400 TTCATCAAGATTCACGGCTCAAAATCATACATCGTGACCTCAAAGCGAGTAACATTCTCT 1459
Query 1322 TAGATGCCAATATGAACCCCAAAATTGCAGATTTTGGAATGGCAAGGATTTTTGGAGTTG 1381
||||||| |||||||||| |||||||| ||||| |||||||||||||| |||||||| |
Sbjct 1460 TAGATGCGGATATGAACCCGAAAATTGCTGATTTCGGAATGGCAAGGATCTTTGGAGTGG 1519
Query 1382 ATCAAAGTCAAGCCAACACAAG-AAGAATCGTCGGAACATTTGGTTATATGTCTCCAGAA 1440
| |||| | |||||| || | |||| | || ||||| |||||||| |||||||| ||
Sbjct 1520 ACCAAACTGTAGCCAATACC-GCAAGAGTAGTTGGAACCTTTGGTTACATGTCTCCTGAG 1578
Query 1441 TATGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTATAGCTTTGGAATATTGGTT 1500
|||| | | |||||| ||||| ||||| || || |||||||| |||||| ||||| ||
Sbjct 1579 TATGTGACACATGGCCAATTCTCAATGAAATCAGACGTCTATAGTTTTGGAGTATTGATT 1638
Query 1501 CTGGAGGTTATAAGTGGCaaaaa-aaCTAGCAGTTTCTA 1538
|| ||| | || ||||||||||| || |||||| |||||
Sbjct 1639 CTTGAGATCATTAGTGGCAAAAAGAA-TAGCAGCTTCTA 1676
> AT4G11500.1 | Symbols: | pseudogene, similar to putative receptor-like
serine-threonine protein kinase, blastp match of
59% identity and 6.5e-66 P-value to GP|18076583|emb|CAC84552.1||AJ306626
putative receptor-like serine-threonine protein
kinase {Solanum tuberosum} | chr4:6982597-6983619 FORWARD LENGTH=1023
Length=1023
Score = 320 bits (173), Expect = 3e-86
Identities = 219/241 (91%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 1183 GACCCTGCAAAACAAGGTGAACTAGACTGGACAAGACGGTACAATATCATTGGGGGGATT 1242
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 GACCCTGCAAAACAAGGTGAACTAGATTGGACAAGACGGTACAATATCATTGGGGGGATT 298
Query 1243 GCTCGAGGAATTCTATATCTTCATCATGATTCACGGCTTACAATCATACATCGTGATCTC 1302
|||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 299 GCTCGAGGAATTCTATATCTTCATCAAGATTTACGGCTTACAATCATACACCGTGATCTC 358
Query 1303 AAAGCGAGTAACATTCTCTTAGATGCCAATATGAACCCCAAAATTGCAGATTTTGGAATG 1362
||||||||||| ||||||||||||| | | ||||| |||||||||||||||||||| |||
Sbjct 359 AAAGCGAGTAATATTCTCTTAGATGTCGACATGAAACCCAAAATTGCAGATTTTGGCATG 418
Query 1363 GCAAGGATTTTTGGAGTTGATCAAAGTCAAGCCAA---CACAAGAAGAATCGTCGGAACA 1419
|| ||||||| || ||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 419 GCTAGGATTTACAGAATTGATCAAAGTCATGCCAATTACACAATTAGAATCGTTGGAACA 478
Query 1420 T 1420
|
Sbjct 479 T 479
Score = 161 bits (87), Expect = 2e-38
Identities = 128/148 (86%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 1422 TGGTTATATGTCTCCAGAATATGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTA 1481
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 574 TGGTTATATGTCTCCAGAATATGCAATGCGTAGTCATTTCTCCATGAAATCTGATGTCTA 633
Query 1482 TAGCTTTGGAATATTGGTTCTGGAGGTTATAAGTGGCaaaaa-aaCTAGCAGTTTCTACA 1540
||||||||| || || |||| ||| |||||||||| |||| || | |||| ||||||
Sbjct 634 TAGCTTTGGTGTAATGATTCTAGAGATTATAAGTGGTAAAACGAA-TCGCAGCTTCTACT 692
Query 1541 ACATTGATGATTCTGGTGGCAATTTGGT 1568
||||||||| |||| | ||||||||||
Sbjct 693 ACATTGATGGTTCTCCTAGCAATTTGGT 720
Score = 115 bits (62), Expect = 1e-24
Identities = 68/71 (96%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 306 TAACCAAACAGATGCTTATACATGGCCAGATTGTTGTATGGTACGTTATTCCAACATTTC 365
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 10 TAACCAAACAGAAGCTTAGACATGGCCAGATTGTTGTATGGTACGTTATTCCAACATTTC 69
Query 366 ATTCTCTGGAT 376
||||||||||
Sbjct 70 TTTCTCTGGAT 80
> AT4G23260.1 | Symbols: CRK18 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 18 | chr4:12167354-12170086 REVERSE LENGTH=2185
Length=2185
Score = 307 bits (166), Expect = 2e-82
Identities = 331/411 (81%), Gaps = 10/411 (2%)
Strand=Plus/Plus
Query 1144 GAGTTTGTCCCCAACAAAAGCCTCGACTATTTCTTGTTTGACCCTGC-AAAACAAGGTGA 1202
|||||||| | |||||||||||||| |||||| | ||||| ||| | || | || | |
Sbjct 1268 GAGTTTGTTTCAAACAAAAGCCTCGATTATTTCCTCTTTGATCCTACGAAGAGAA-ATCA 1326
Query 1203 ACTAGACTGGACAA-GACGGTACAATATCATTGGGGGGATTGCTCGAGGAATTCTATATC 1261
| |||||||||| | || ||||||||| || || ||| ||||||| ||| ||||||
Sbjct 1327 GTTGGACTGGACAATG-CGACGCAATATCATCGGTGGCATTACTCGAGGGATTTTATATC 1385
Query 1262 TTCATCATGATTCACGGCTTACA-ATCATACATCGTGATCTCAAAGCGAGTAACATTCTC 1320
||||||| ||||| ||||| | | |||||||||||||| |||||||||||||||||||||
Sbjct 1386 TTCATCAAGATTCGCGGCTGA-AGATCATACATCGTGACCTCAAAGCGAGTAACATTCTC 1444
Query 1321 TTAGATGCCAATATGAACCCCAAAATTGCAGATTTTGGAATGGCAAGGATTTTTGGAGTT 1380
|||||||| ||||||| || ||||| || ||||| |||||||||||||| ||||||||
Sbjct 1445 TTAGATGCGGATATGAATCCAAAAATCGCTGATTTCGGAATGGCAAGGATCTTTGGAGTG 1504
Query 1381 GATCAAAGTCAAGCCAACACAAGAAGAATCGTCGGAACATTTGGTTATATGTCTCCAGAA 1440
|| |||| | ||||| ||| ||||| | || ||||| |||||||| |||||||| ||
Sbjct 1505 GACCAAACTGTTGCCAATACAGGAAGAGTGGTTGGAACCTTTGGTTACATGTCTCCTGAG 1564
Query 1441 TATGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTATAGCTTTGGAATATTGGTT 1500
|||| | | |||||| ||||| ||||| || || |||||||| |||||| ||||| ||
Sbjct 1565 TATGTGACACATGGCCAATTCTCAATGAAATCAGACGTCTATAGTTTTGGAGTATTGATT 1624
Query 1501 CTGGAGGTTATAAGTGGCaaaaa-aaCTAGCAGTTTCTAC-AACATTGATG 1549
|| ||| | || ||||||||||| || |||||| |||||| || || ||||
Sbjct 1625 CTTGAGATCATTAGTGGCAAAAAGAA-TAGCAGCTTCTACCAA-ATGGATG 1673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94025620785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5