BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914950
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50790.1 | Symbols: | Plant mobile domain protein family | ... 425 2e-118
AT1G50820.1 | Symbols: | Aminotransferase-like, plant mobile d... 398 4e-110
AT1G50750.1 | Symbols: | Plant mobile domain protein family | ... 279 2e-74
> AT1G50790.1 | Symbols: | Plant mobile domain protein family
| chr1:18824050-18826488 REVERSE LENGTH=2439
Length=2439
Score = 425 bits (230), Expect = 2e-118
Identities = 402/484 (83%), Gaps = 15/484 (3%)
Strand=Plus/Plus
Query 6 TCAA-GTTTGGACATGGGAAAGATTTAGGGAACTACAACCAAAACCTAATAAGTTGCTAC 64
|||| ||||||| ||||| ||||| |||| ||||||| ||||||| ||| |||| ||
Sbjct 809 TCAATGTTTGGATTTGGGAGAGATTCAGGGCACTACAATCAAAACCCAATCTGTTGTTAA 868
Query 65 AAGGTCAGCCAAGATTGGGGCTTTGGGATGACTTGAAACAGCA-AACCAGGGATGTGAAG 123
||||| |||||||||||| |||||| ||||| |||||||| | |||||| ||| |||
Sbjct 869 AAGGTGAGCCAAGATTGGCTCTTTGGAATGACCTGAAACAG-AGAACCAGCAATGCAAAG 927
Query 124 CAGATTTTGGAA-AACTCGAAAATGGACAGTTTTGAGTGGCGTCCCTACACAAGAACTGT 182
| |||| | ||| ||||||||||| || ||||||||||| |||| ||||||| ||||||
Sbjct 928 CGGATTCT-GAACAACTCGAAAATCGATGGTTTTGAGTGGTGTCCATACACAAAAACTGT 986
Query 183 GACAAACTGGAAGTTTCCTAAGTTTTACCCCGAGAAAGCGATGTGTGTTACTGTTTG-TC 241
|| ||||||| | |||||| ||||||| || |||||||||| ||| || ||| ||| ||
Sbjct 987 GAAAAACTGGGACTTTCCTCAGTTTTATCCTGAGAAAGCGACGTGGGTGACT-CTTGTTC 1045
Query 242 CGAGTCTTGATGAAGAATTTATCTCCTTTGCTCGATGCATCAAAGTTTCTGAGCTTGTTG 301
| | | |||||| |||||||||||||||||||||||||| | || ||| |||||||||
Sbjct 1046 CCAACCGTGATGATGAATTTATCTCCTTTGCTCGATGCATTATGGTGTCTCAGCTTGTTG 1105
Query 302 GCATTAAGAAAG--TGGAGCATTACT-TCCCAAATAGAGTGGCTACACAGTTTGGAATGC 358
||||| || || |||||||||||| |||| ||| | |||||| |||||||||| | ||
Sbjct 1106 GCATT--GACAGTTTGGAGCATTACTATCCC-AATCGGGTGGCTTCACAGTTTGGGAGGC 1162
Query 359 TTCAGGATATTCCTT-CCCTTGTTGACAGGAACAACCTCTCACGGGAGGCAGCTTGGAAT 417
|||||||| | | || || |||| || |||||||||||||||| |||||||||||||||
Sbjct 1163 TTCAGGATGTGCATTGTCC-TGTTAACCGGAACAACCTCTCACGTGAGGCAGCTTGGAAT 1221
Query 418 GATTACAATAAGCCTATTAATGATTTGGCATTAAACATTCCTTCCCGTTCTGCAATATCT 477
|||||| | |||||| || ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1222 GATTACTACAAGCCTCTTGATGATTTGGAATTATACATTCCTTCCCGTTCTGCAATATCT 1281
Query 478 TGTG 481
||||
Sbjct 1282 TGTG 1285
> AT1G50820.1 | Symbols: | Aminotransferase-like, plant mobile
domain family protein | chr1:18833275-18834861 REVERSE LENGTH=1587
Length=1587
Score = 398 bits (215), Expect = 4e-110
Identities = 404/493 (82%), Gaps = 22/493 (4%)
Strand=Plus/Plus
Query 3 GGTTCAAGTTTGGACATGGGAAAGATTTAGGGAACTACAACCAAAACCTAATAAGTTGCT 62
||||||||||||| ||||||| ||||| ||||||||||||| ||||||| | ||||||
Sbjct 795 GGTTCAAGTTTGGGCATGGGAGAGATTCAGGGAACTACAACTAAAACCTTTTTCGTTGCT 854
Query 63 ACA-AGGTCAGCCAAGATTGGGGCTTTGG-GATGACTTGAAACAGCA-AACCAGGGATG- 118
| | ||| |||||||||||| | ||| | |||| |||||||| | ||||| |||
Sbjct 855 A-AGGGGTGAGCCAAGATTGGCTCGGTGGTG-TGACATGAAACAG-AGTACCAGCAATGC 911
Query 119 -TGAAGCAGATTTTGGAA-AACTCGAAAATGGACAGTTTTGAGTGGCGTCCCTACAC-AA 175
|| || |||||| || ||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 912 TTGGAG--GATTTT-CAACAACTCCAAAATGGATAGTTTTGAGTGGCGCCCCTACACTAA 968
Query 176 GAACTGTGACAAACTGGAAGTTTCCTAAG-TTTTACCCCGAGAAAGCGATGTGTGTTACT 234
|||||||| ||||||| | |||||| | ||||| || |||| ||| ||| | || ||
Sbjct 969 -AACTGTGAAAAACTGGGATTTTCCT-CGATTTTATCCTGAGAGAGCAATGCGGGTGCCT 1026
Query 235 GTTTGTCCGAGTCTTGATGAAGAATTTATCTCCTTTGCTCGATGCATCAAAGTTTCTGAG 294
||| |||| | |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1027 GTTGGTCCCAACCTTGATGATGAATTTATCTCCTTTGCTCGATGCATCAAGGTGTCTGAG 1086
Query 295 CTTGTTGGCATTAAGAAAGTGGAGCATTAC-TTCCCAAATAGAGTGGCTACACAGTTTGG 353
|||||||| ||| | | |||||||||||| ||||| ||| |||||||| ||||||||||
Sbjct 1087 CTTGTTGGTATTGACAGTGTGGAGCATTACTTTCCC-AATCGAGTGGCTTCACAGTTTGG 1145
Query 354 AATGCTTCAGGATATTCCTT-CCCTTGTTGA-CAGGAACAACCTCTCACGGGAGGCAGCT 411
|||| ||| ||| ||| || || |||| | || ||| || |||||||| || ||||||
Sbjct 1146 GATGCGTCAAGATGTTCATTGTCC-TGTTAACCA-GAAAAAACTCTCACGTGATGCAGCT 1203
Query 412 TGGAATGATTACAATAAGCCTATTAATGATTTGGCATTAAACATTCCTTCCCGTTCTGCA 471
|||||||||||| | ||||||||| ||| |||| || || ||||||||||||||||||||
Sbjct 1204 TGGAATGATTACGACAAGCCTATTGATGGTTTGACAATATACATTCCTTCCCGTTCTGCA 1263
Query 472 ATATCTTGTGTTA 484
|||||||||||||
Sbjct 1264 ATATCTTGTGTTA 1276
> AT1G50750.1 | Symbols: | Plant mobile domain protein family
| chr1:18809184-18812290 REVERSE LENGTH=2691
Length=2691
Score = 279 bits (151), Expect = 2e-74
Identities = 238/279 (85%), Gaps = 9/279 (3%)
Strand=Plus/Plus
Query 239 GTCCGAGTCTTGATGAAGAATTTATCTCCTTTGCTCGATGCATCAAAGTTTCTGAGCTTG 298
|||| | |||||||| |||||| ||||||||||||||||||| || || ||| ||||||
Sbjct 1061 GTCCCAATCTTGATGTTGAATTTGTCTCCTTTGCTCGATGCATTAAGGTGTCTCAGCTTG 1120
Query 299 TTGGCATTAAGAAAGTGGAGCATTAC-TTCCCAAATAGAGTGGCTACACAGTTTGGAATG 357
|||| ||| | || |||||||||||| ||||| ||| |||||||| |||||||||| |||
Sbjct 1121 TTGGAATTGACAATGTGGAGCATTACTTTCCC-AATCGAGTGGCTTCACAGTTTGGGATG 1179
Query 358 CTTCAGGATATTCCTT-CCCTTGTTGA-CAGGAACAACCTCTCACGGGAGGCAGCTTGGA 415
||||| ||| |||||| | |||| | || |||||||||||||| ||||||||||||||
Sbjct 1180 CTTCAAGATGTTCCTTGTGC-TGTTAACCA-GAACAACCTCTCACAGGAGGCAGCTTGGA 1237
Query 416 ATGATTACAATAAGCCTATTAATGATTTGGCATTAAACATTCCTTCCCGTTCTGCAATAT 475
|||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||
Sbjct 1238 ATGATTACAATAAGCCTATTAACGATTTAGCATTATTCATTCCTTCACGTTCTGCAATAC 1297
Query 476 CTTGTGTTAGTACTCTAACGTTTTCCGAATGGTGGAGGA 514
|| |||||| | | | |||||| | ||||||||||||||
Sbjct 1298 CTCGTGTTACT-C-C-AACGTTCTGCGAATGGTGGAGGA 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29186039407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5