BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914952
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56510.1 | Symbols: WRR4, ADR2 | Disease resistance protein ... 390 6e-108
AT1G56540.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 374 6e-103
AT1G66090.1 | Symbols: | Disease resistance protein (TIR-NBS c... 231 4e-60
> AT1G56510.1 | Symbols: WRR4, ADR2 | Disease resistance protein
(TIR-NBS-LRR class) | chr1:21167589-21173632 FORWARD LENGTH=3657
Length=3657
Score = 390 bits (211), Expect = 6e-108
Identities = 363/435 (83%), Gaps = 15/435 (3%)
Strand=Plus/Plus
Query 20 ATTCAAGTGTGATGAAACAAAGGCTAGACGACCAGAGGGTTCTTATTATTCTTGATGATG 79
||| ||||||||| ||| | |||||| | ||| ||| ||||||||| |||||||||||||
Sbjct 951 ATTTAAGTGTGATAAAAGATAGGCTACAAGACAAGAAGGTTCTTATCATTCTTGATGATG 1010
Query 80 AGGAGAGTCTATTTCCACTAGAGGCTTTGGTC-GATATTACGTGGTTTGGTCCTGGAAGT 138
||||||| || || ||| ||| |||||| | ||||| |||||||||||||||||||||
Sbjct 1011 TGGAGAGTTTAGCTCAACTTGAGACTTTGG-CTGATATGACGTGGTTTGGTCCTGGAAGT 1069
Query 139 AGGGTCATAGTTACAATTGAAAAACAAA-AGATTTTGGAGCAACATGGTATCAATGATAT 197
||||||||||| || | |||||| |||| |||||||| |||||||||||||| ||||||
Sbjct 1070 AGGGTCATAGTAACGACTGAAAA-CAAAGAGATTTTGCAGCAACATGGTATCGGTGATAT 1128
Query 198 ATACCAAGTGGGGTTTCCATCAGAAAGAGAAGCTCTAAAGATCTTTTGTCTATCTGCTTT 257
||||||||| || | |||||||||||| ||||| |||| |||||| ||||||||||||||
Sbjct 1129 ATACCAAGTTGGATATCCATCAGAAAGCGAAGCACTAACGATCTTCTGTCTATCTGCTTT 1188
Query 258 TAGGCAAACCTTTCCACCTAATGTGTTTATAGCTCTTGCGGATGAAGTTGCAAGTAATT- 316
|| ||| ||| ||||||| ||| |||||| | ||||||||||||||||| ||| ||||
Sbjct 1189 TAAACAAGCCTCTCCACCTGATGGGTTTATGGATCTTGCGGATGAAGTTGTAAG-AATTT 1247
Query 317 GTGGCAATCTTCCGTTGGGTCTACATGTTTTAGGGACGTCATTGC-GAGGAAAGAGCCAG 375
||| || ||||| |||| ||| |||||||||| ||||||||| | | ||||||||||
Sbjct 1248 GTGATAAGCTTCCATTGGCTCTGTGTGTTTTAGGGTCGTCATTGCTGCG-AAAGAGCCAG 1306
Query 376 GCTGATTGGATAG-ATAAACTACCAAGGTT-AGAAAACTGTCTTGATGCAAGAACTGAGA 433
|||| ||| || || |||| |||||||| ||||| ||||||||| | ||| |||||
Sbjct 1307 ACTGACTGGG-AGGATGAACTGCCAAGGTTGAGAAA-CTGTCTTGACG---GAATTGAGA 1361
Query 434 GTGTAGTGAAAGTGG 448
||||| |||||||||
Sbjct 1362 GTGTATTGAAAGTGG 1376
> AT1G56540.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:21181664-21185306 FORWARD LENGTH=3291
Length=3291
Score = 374 bits (202), Expect = 6e-103
Identities = 351/420 (84%), Gaps = 22/420 (5%)
Strand=Plus/Plus
Query 40 AGGCTAGACGACCAGAGGGTTCTTATTATTCTTGATGATGAGGAGAGTCTATTTCCACTA 99
|||||| ||||||||| ||||||||| ||||||||||||| |||||||||| || |||
Sbjct 862 AGGCTACACGACCAGAAGGTTCTTATCATTCTTGATGATGTGGAGAGTCTAGATCAACTT 921
Query 100 GAGGCTTTGGTC-GATAT-TACGTGGTTTGGTCCTGGAAGTAGGGTCATAGTTACAATTG 157
|| ||||||| | |||| | |||||||||||||||||||||||||||||| || | ||
Sbjct 922 GATGCTTTGG-CTAATATCGA-GTGGTTTGGTCCTGGAAGTAGGGTCATAGTGACCACTG 979
Query 158 AAAAACAAA-AGATTTTGGAGCAACATGGTATCAATGATATATACCAAGTGGGGTTTCCA 216
|||| |||| ||||||| ||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 980 AAAA-CAAAGAGATTTTACAGCAACATGGTATCAGTGATATATACCACGTGGGTTTTCCA 1038
Query 217 TCA-GAAAGAGAAGCTCTAAAGATCTTTTGTCTATCTGCTTTTAGGCAAAC-CTTTCCAC 274
||| | || ||||||| ||| ||||||||||||||| |||||||| ||| | || |||||
Sbjct 1039 TCAAGTAA-AGAAGCTTTAATGATCTTTTGTCTATCCGCTTTTAGACAA-CTCTCTCCAC 1096
Query 275 CTAAT-GTGTTTAT-AGCTCTTGCGGATGAAGTTGCAA-G-TAATTGTGGCAATCTTCCG 330
|| || | |||||| | |||||| | ||||||||||| | | |||||| |||||||
Sbjct 1097 CTGATCG-GTTTATGAA-TCTTGCTGCTGAAGTTGCAAAGCT--TTGTGGTTATCTTCCA 1152
Query 331 TTGGGTCTACATGTTTTAGGGACGTCATTGCGAGGAAAGAGCCAGGCTGATTGGATAGAT 390
|||| ||| |||||||||||| | |||||||| ||||||| | | |||| ||||||||
Sbjct 1153 TTGGCTCTGCATGTTTTAGGGTCATCATTGCGGGGAAAGAACTATTCTGACTGGATAGA- 1211
Query 391 A-AACTACCAAGGTTAGAAAACT-GTCTTGATGCAAGAACTGAGAGTGTAGTGAAAGTGG 448
| |||||||||| || | ||||| ||||||||| ||||| |||||||||| |||||||||
Sbjct 1212 AGAACTACCAAGATT-GCAAACTTGTCTTGATGGAAGAATTGAGAGTGTATTGAAAGTGG 1270
> AT1G66090.1 | Symbols: | Disease resistance protein (TIR-NBS
class) | chr1:24602146-24604763 FORWARD LENGTH=1555
Length=1555
Score = 231 bits (125), Expect = 4e-60
Identities = 264/328 (80%), Gaps = 22/328 (7%)
Strand=Plus/Plus
Query 38 AAAGGCTAGACGACCAGAGGGTTCTTATTATTCTTGATGATGAGGA-GAGTCTATTTCCA 96
|||||||| ||||||||||||||||||| ||||||||||| | || ||||||| | |
Sbjct 971 AAAGGCTACACGACCAGAGGGTTCTTATCATTCTTGATGACG-TGACGAGTCTAGAGCAA 1029
Query 97 CTAGAGGCTTTGGTC-GATATTACGTGGTTTGGTCCTGGAAGTAGGGTCATAGTTA-CAA 154
||||||| ||||| | |||| | ||||| |||||||||||||||| ||||||| | | |
Sbjct 1030 CTAGAGGTTTTGG-CTAATATCAAGTGGTATGGTCCTGGAAGTAGGATCATAGTAATC-A 1087
Query 155 TTGAAAAACAAA-AGATTTTGGAGCAACATGGTATCAATGATATATACCAAGTGGGGTTT 213
| ||||| ||| | ||||||| ||||||||||||| |||||||||||| ||||| |||
Sbjct 1088 CT-AAAAAGAAAGATATTTTGGTGCAACATGGTATCTGTGATATATACCATGTGGGTTTT 1146
Query 214 CCATCAGAAAG-AGAAGCTCTAAAGATCTTTTGTCTATCTGCTTTTAGGCAAACCTTTCC 272
||| ||| | | ||| |||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1147 CCAACAG-ATGCAGATGCTCTAAAGATCTTTTGTCTATCTGCTTATAGACAAACCTCTCC 1205
Query 273 ACCTAATGTGTT-TAT-AGC-T-CTTGCG-GATGAA--GTTGC-AAGTAATT-GTGGCAA 323
|||| ||| | | ||| | | | || | | |||| ||| || |||| |||||||
Sbjct 1206 ACCTGATG-GATCTATGAAAATTCATGAGTG-TGAAATGTTTATAAA-AATTTGTGGCAA 1262
Query 324 TCTTCCGTTGGGTCTACATGTTTTAGGG 351
|||||| ||| |||||||||||| |||
Sbjct 1263 TCTTCCATTGCATCTACATGTTTTGGGG 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5