BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914958

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G56553.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   366    5e-101


> AT1G56553.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr1:21189722-21190175 FORWARD LENGTH=341
Length=341

 Score =  366 bits (198),  Expect = 5e-101
 Identities = 238/257 (93%), Gaps = 4/257 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTATCACCATGAGAACTTTAGTGGCATTTGTTTTCACTATCTTTTTCATCATATCT  60
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCCATAACCATGAGAACTTTAGTGGCATTTGTTTTCACTATCTTTTTCATCATATCT  60

Query  61   TTTGTTCACAGTCGTACAACAACACCAGGTTATGGAATGTTGTTTGACGCCGTGGCTTGC  120
            |||||||||||||||||||||||  |||||||||||||||| |||||| |||||||||||
Sbjct  61   TTTGTTCACAGTCGTACAACAACTTCAGGTTATGGAATGTTATTTGACTCCGTGGCTTGC  120

Query  121  GAGGGAGGATTTGAATATTGTCCTCCTGGTGGTGGAGA-CGCCAAGTGCACTGCCTTCTG  179
            ||||||||||||||||||||||||| ||||||||| || || |||||||||| |||| ||
Sbjct  121  GAGGGAGGATTTGAATATTGTCCTCGTGGTGGTGG-GAACGACAAGTGCACTACCTTTTG  179

Query  180  TAAAACCTTGCCAAACAAATATGATTTTGGAGTATGT-AGTAAGATATACGCATGTTGCT  238
            || || |||||||||||||||||||||||| |||||| | |||||| |||||||||||||
Sbjct  180  TAGAAGCTTGCCAAACAAATATGATTTTGGCGTATGTGA-TAAGATCTACGCATGTTGCT  238

Query  239  GTCATAAAAATGTTTAA  255
            |||||| ||||||||||
Sbjct  239  GTCATATAAATGTTTAA  255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5