BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914969

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 a...   134    8e-31


> AT3G56140.1 | Symbols:  | Protein of unknown function (DUF399 
and DUF3411) | chr3:20829282-20832871 FORWARD LENGTH=2565
Length=2565

 Score =  134 bits (72),  Expect = 8e-31
 Identities = 111/128 (87%), Gaps = 9/128 (7%)
 Strand=Plus/Plus

Query  191   ATGCTATAACTGATACAGCGAGAGGATCAGTTGTT--TATTTTCCCAGTTTGGCTTCCTG  248
             ||| |||||||||||||| |||||||||||| |||  | ||||| |||||||||||||||
Sbjct  1684  ATGTTATAACTGATACAGTGAGAGGATCAGTCGTTGATTTTTTCACAGTTTGGCTTCCTG  1743

Query  249   CACCAACTCTCTGTCTCTGTCTT-C-TCT--TGATGAGACCACTGGACCAGACAGCATAG  304
             |||||||| | ||||| | |||| | | |  |||||||||||||||||||||||||||||
Sbjct  1744  CACCAACT-T-TGTCTTT-TCTTTCATATGCTGATGAGACCACTGGACCAGACAGCATAG  1800

Query  305   ACACCCTG  312
             || |||||
Sbjct  1801  ACGCCCTG  1808



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5