BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914971

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G58430.1 | Symbols:  | TRAF-like family protein | chr3:21613...   224    6e-58
  AT3G58410.1 | Symbols:  | TRAF-like family protein | chr3:21604...   111    5e-24
  AT3G29580.1 | Symbols:  | Arabidopsis phospholipase-like protei...  63.9    1e-09


> AT3G58430.1 | Symbols:  | TRAF-like family protein | chr3:21613163-21616183 
REVERSE LENGTH=1617
Length=1617

 Score =  224 bits (121),  Expect = 6e-58
 Identities = 205/244 (84%), Gaps = 12/244 (5%)
 Strand=Plus/Plus

Query  175   AGACATCCAGACATTGCAGTCG-GCTTCCGCGCAAAGAGCCAACATCTAAGGACAACATA  233
             ||||| || ||||||||||| | | ||||| ||||||| ||||||||| |||||| ||| 
Sbjct  1048  AGACACCCTGACATTGCAGTAGAG-TTCCGAGCAAAGAACCAACATCTGAGGACATCATG  1106

Query  234   CATGAATTTCT-TGCTTAGCTT-ATTCGAAACGCTGTGCAAGTCACTTCAGGAGCT-TAC  290
             |||| |||| | ||||||| || ||| || || |||||| |||||||| | ||||| | |
Sbjct  1107  CATG-ATTTTTCTGCTTAGTTTAATT-GAGACACTGTGCCAGTCACTTGAAGAGCTCT-C  1163

Query  291   CAATGAAGATCTTGTGGATGCAGACATTTCGTTGACATACT-TGAAATATGTGA-GCTTT  348
              ||||||||||||||||| ||||||||| | |||||||| | ||||| |||  | | |||
Sbjct  1164  AAATGAAGATCTTGTGGAAGCAGACATTGCATTGACATA-TGTGAAAGATG-CAGGATTT  1221

Query  349   AAGGTGGATTGGTTGGAGAAGAAGCTGGAACAAGTGAAAGAAAAGAAAGAGAAAGAGCAG  408
             ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| | |
Sbjct  1222  AAGGTGGATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAGGAGAAAGAACTG  1281

Query  409   TCTG  412
             ||||
Sbjct  1282  TCTG  1285


> AT3G58410.1 | Symbols:  | TRAF-like family protein | chr3:21604871-21606229 
REVERSE LENGTH=987
Length=987

 Score =  111 bits (60),  Expect = 5e-24
 Identities = 84/95 (88%), Gaps = 3/95 (3%)
 Strand=Plus/Plus

Query  7    AAGCATGTTGGTAAGAAGTTTACTTGGGTGATAAAGAACTTCTCCTCTTTGCAATCTGAG  66
            ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| | ||
Sbjct  70   AAGCAAGTTGGTAAGAAGTTCGCTTGGGTGATAAAGAACTTCTCCTCTTTGCAATGTAAG  129

Query  67   AAACGTATTTATTCTGTTCCGGTCCTGATTGGTGA  101
            ||  || |||||||||||||  ||| |||||||||
Sbjct  130  AA--GT-TTTATTCTGTTCCATTCCAGATTGGTGA  161


> AT3G29580.1 | Symbols:  | Arabidopsis phospholipase-like protein 
(PEARLI 4) with TRAF-like domain | chr3:11394675-11395871 
REVERSE LENGTH=921
Length=921

 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 34/34 (100%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  137  TTGTTAATGGGTTTCATGTTCTTCCTTCACAGGT  170
            ||||||||||||||||||||||||||||||||||
Sbjct  527  TTGTTAATGGGTTTCATGTTCTTCCTTCACAGGT  560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5