BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg914987

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24068.1 | Symbols:  | other RNA | chr1:8515506-8515971 FORW...   261    3e-69


> AT1G24068.1 | Symbols:  | other RNA | chr1:8515506-8515971 FORWARD 
LENGTH=466
Length=466

 Score =  261 bits (141),  Expect = 3e-69
 Identities = 183/204 (90%), Gaps = 0/204 (0%)
 Strand=Plus/Plus

Query  60   CAATAAAGTTTGTGGCATTGCAAGGATGATTGAACTCATTAAAGGGCACCCGAAGCTGCT  119
            |||||||| | || ||||||||||||||||| |||||||||||| ||||||| |||||||
Sbjct  202  CAATAAAGATAGTAGCATTGCAAGGATGATTAAACTCATTAAAGCGCACCCGCAGCTGCT  261

Query  120  TCTTGGTCTCAAAGTCTTCCTTCCCGAGGCTAGCAAAGAATTATGCCAATCTCAAACCAT  179
            || |||||| || ||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct  262  TCCTGGTCTTAATGTCTTCCTTCCAGAGGCTAACAAAGGATTATGCCAATCTCAAACCAT  321

Query  180  AGGTTCCACAAGCGTATCACCGAAGCTACTTAAGGTTAATGTGCCTACAAACCTGATTTC  239
            |||||||||||||||||| ||| |||||||||||||||||| | || || |||||  |||
Sbjct  322  AGGTTCCACAAGCGTATCCCCGGAGCTACTTAAGGTTAATGCGTCTGCATACCTGGCTTC  381

Query  240  TGTGGAAGAGGCATTTGATGATGA  263
            ||||||||| ||||||||||||||
Sbjct  382  TGTGGAAGAAGCATTTGATGATGA  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5