BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg914996
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03360.1 | Symbols: ATRRP4, RRP4 | ribosomal RNA processing ... 518 5e-146
> AT1G03360.1 | Symbols: ATRRP4, RRP4 | ribosomal RNA processing
4 | chr1:824537-826358 FORWARD LENGTH=1264
Length=1264
Score = 518 bits (280), Expect = 5e-146
Identities = 560/689 (81%), Gaps = 44/689 (6%)
Strand=Plus/Plus
Query 1 ATGGTGATGAGAAAGCTTCAGCTAGAGCTACCATTGAACCAGACGCAAAAGGTCAGGTTT 60
|||||||||||||||| | | | || |||| |||| ||||||||| ||||| ||||||
Sbjct 117 ATGGTGATGAGAAAGC-T-A-C---AGTTACCGTTGAGCCAGACGCAGAAGGTTAGGTTT 170
Query 61 AAGAGAGCTATGGAGCGGCTACAAT-TCT-T-ATCATCGAC-AA--CAAACAAC-TCTGT 113
||||||| || |||||||| |||| || | || ||| | || | || | |||||
Sbjct 171 GAGAGAGCAATCGAGCGGCTTCAATCACTGTCGTCGTCGGCTAACTCTGAC-GCTTCTGT 229
Query 114 TATCGTCGCCGACTCCATTCACG--AA-GATG-C-CTTCC-TCCTTAAGGGACACGGAAC 167
||||||| ||||||| |||| || || ||| | | || |||| |||||||| |||||
Sbjct 230 TATCGTCACCGACTCTATTCCCGTCAACCATGACGATGCCTTCCTCAAGGGACATGGAAC 289
Query 168 TTCCGAGGTCGATGGTGAGTTGATGGCGACGGTCTGTGGAGTTGT-GACTCACGTGGACA 226
|||||||||||||||||||||| | ||||||||||||||||| || || | ||||| |
Sbjct 290 TTCCGAGGTCGATGGTGAGTTGCTCGCGACGGTCTGTGGAGTAGTGGA-GCGTGTGGATA 348
Query 227 AGCTCGTCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAGGTTAAAGATATTGTGG 286
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 349 AGCTTGTCTATGTACGCACCTTGCGAGCCAGGTACAAGCCTGAAGTTGGGGATATTGTGG 408
Query 287 TAGGACGTGTCATCGAGGT--CTCAAAAAGCTGTTGGAGATTGGAGCTCAACT-CTACTA 343
|||| |||||||| ||||| |||||||| | |||||||| |||||||||||| | | |
Sbjct 409 TAGGCCGTGTCATTGAGGTTGCTCAAAAA-C-GTTGGAGAGTGGAGCTCAACTTCAA-TC 465
Query 344 AAGATGGAATTTTGAAGCTTTCTTCTATGGATAA---TGATG-T-T-CAGAGGCGTAA-A 396
| |||||| | ||| ||||||||| ||| | | ||||| | | |||||||| || |
Sbjct 466 AGGATGGAGTACTGATGCTTTCTTCCATGAACATGCCTGATGGTATTCAGAGGCG-AAGA 524
Query 397 ACGTATGTGGATGAACTCAATATGCGGAATATCATTGTAGAAG-ATGATGTCGTTTGTGC 455
|| | |||||||||||||||||||||||||||| ||||||| | |||||||||| |||||
Sbjct 525 ACCTCTGTGGATGAACTCAATATGCGGAATATCTTTGTAGA-GCATGATGTCGTATGTGC 583
Query 456 CGAAGTAGG-ATGTATTCACCGCGATGGCGGTTTGGAGCTACGAGCTACAAGTTACAAAT 514
|||||| | | | |||| | ||||| | ||| || ||| ||| | |||| | || |
Sbjct 584 TGAAGTACGCAACT-TTCAGCATGATGGTAGCTTGCAGTTACAAGCCAGAAGTCAGAAGT 642
Query 515 ATGGCAAGCTTGAAAAGGGACAACATCTGATGGTTGATCCTTACTTGGTTAAGAGAAGCA 574
|||||||||| || |||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 643 ATGGCAAGCTCGAGAAGGGACAACTTCTGAAGGTCGATCCTTACTTGGTTAAGAGAAGCA 702
Query 575 A-CATTCACTTTCATTACATAGAAAGTCTTGGGATCGATTTGATTATCGGCCGCAATGGC 633
| ||| |||||||||||| |||||||||||||||| ||||||||||| ||| |||||||
Sbjct 703 AACAT-CACTTTCATTACGTAGAAAGTCTTGGGATTGATTTGATTATTGGCTGCAATGG- 760
Query 634 TTT-ATTTGGGTTGGGGAACACGTCCAAG 661
||| || |||||||| ||||| ||| |||
Sbjct 761 TTTCATATGGGTTGGAGAACATGTCGAAG 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5