BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915004

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66570.1 | Symbols: PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 ...   285    1e-76


> AT5G66570.1 | Symbols: PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 
| PS II oxygen-evolving complex 1 | chr5:26568653-26570278 
FORWARD LENGTH=1244
Length=1244

 Score =  285 bits (154),  Expect = 1e-76
 Identities = 193/212 (91%), Gaps = 2/212 (1%)
 Strand=Plus/Plus

Query  38   CAGACAGTGTAAGCAAGAACGCGACTCCTGAGTTCCAGAACACCAAGCTCATGACCCGTC  97
            ||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||
Sbjct  531  CAGACAGTGTAAGCAAGAACGCTCCTCCAGAGTTCCAGAACACAAAGCTCATGACCCGTC  590

Query  98   TCACCTACACCCTTGTCGAGATCGAAGGACCCTTTGAGGTTGCTTCAGACGGAAGCGTCA  157
            | ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct  591  TTACCTACACCCTTGACGAGATCGAAGGACCCTTCGAGGTTGCTTCAGACGGAAGCGTCA  650

Query  158  ATTTCAAGGAAGAAGATGGAATCGATTGTGCTGCTGTGACAGTCCAGCTTCCAGGAGGTG  217
            ||||||||||||||||||||||||| | |||||| || |||||||| |||||||||||||
Sbjct  651  ATTTCAAGGAAGAAGATGGAATCGACTATGCTGCAGTCACAGTCCAACTTCCAGGAGGTG  710

Query  218  AGTGTGTGCCATTACTCTTTATACTGTCAAAC  249
            |  |||||||||| || |||  || |||||||
Sbjct  711  AACGTGTGCCATTCCT-TTTC-ACAGTCAAAC  740


 Score = 60.2 bits (32),  Expect = 9e-09
 Identities = 37/39 (95%), Gaps = 2/39 (5%)
 Strand=Plus/Plus

Query  1    ATGGAAGTGAAAGGAACTGGAACGGCTAAC-ACGTGCCC  38
            |||||||||||||||||||||||||||||| | ||||||
Sbjct  398  ATGGAAGTGAAAGGAACTGGAACGGCTAACCA-GTGCCC  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667472748


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5