BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915005

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41350.2 | Symbols:  | unknown protein; BEST Arabidopsis tha...   204    7e-52
  AT1G57620.1 | Symbols:  | emp24/gp25L/p24 family/GOLD family pr...   195    4e-49


> AT2G41350.2 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G21980.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr2:17231341-17233458 FORWARD LENGTH=1124
Length=1124

 Score =  204 bits (110),  Expect = 7e-52
 Identities = 130/140 (93%), Gaps = 0/140 (0%)
 Strand=Plus/Plus

Query  236   AGATGTTACTCAATCATGTTGGCTACTCTCCTAAGATCAGCCACAGAGAGCTGGTAGAAA  295
             ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct  874   AGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACAGAGAGCTGGTAGAAA  933

Query  296   TGGCAAAGCACCGGAAGGAATTGGAGAAGATGGCAAAACCCGTTCTTGATACTCTAAGAA  355
             ||||| ||||||||||||||||||| |||||| ||||||| || |||||||||||| |||
Sbjct  934   TGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCCTTGATACTCTACGAA  993

Query  356   GCTACCAGGACTTGCCTCCG  375
             |||||||||| || ||||||
Sbjct  994   GCTACCAGGATTTACCTCCG  1013


> AT1G57620.1 | Symbols:  | emp24/gp25L/p24 family/GOLD family 
protein | chr1:21342721-21344804 FORWARD LENGTH=1004
Length=1004

 Score =  195 bits (105),  Expect = 4e-49
 Identities = 121/128 (95%), Gaps = 3/128 (2%)
 Strand=Plus/Plus

Query  73   ATGGCA--GTG-TACACCACAAGGAAAATACAACAAACGGTCAGTTTGCATTTACAACCC  129
            ||||||  ||| ||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct  360  ATGGCACCGTGTTACACCACAGGGAAAATACAACAAACGGTCAGTTTGCATTCACAACCC  419

Query  130  AAGAATCAGGAACTTACTTGGCGTGTTTTGAGGCCGATGCCAAAAATCATGGTAACAAAG  189
            |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct  420  AAGAATCAGGAACTTACTTGGCGTGTTTTGAGGCCGATGCTAAAAGTCATGGTAACAAAG  479

Query  190  ATTTTAGC  197
            ||||||||
Sbjct  480  ATTTTAGC  487


 Score = 69.4 bits (37),  Expect = 3e-11
 Identities = 41/43 (95%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  195  AGCCAAAGATTGGGACTCCATTGCTAGAAAAGAGAAGATCGAG  237
            ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  517  AGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAG  559



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21263257827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5